Sequence Similarity Clusters for the Entities in PDB 2EC0

Entity #1 | Chains: B,E
5'-R(P*AP*UP*GP*GP*GP*CP*CP*C)-3' rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,F
5'-R(*GP*GP*GP*CP*CP*CP*A)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,D
RNA-dependent RNA polymerase protein, length: 476 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4711
95 % 19 25 2288 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 19 25 2355
70 % 19 25 2355
50 % 19 25 2329
40 % 21 29 1419
30 % 90 100 396

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures