Sequence Similarity Clusters for the Entities in PDB 2EC0

Entity #1 | Chains: B,E
5'-R(P*AP*UP*GP*GP*GP*CP*CP*C)-3' rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,F
5'-R(*GP*GP*GP*CP*CP*CP*A)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,D
RNA-dependent RNA polymerase protein, length: 476 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 6007
95 % 19 25 2152 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 19 25 2205
70 % 19 25 2193
50 % 19 25 2173
40 % 21 29 1376
30 % 89 99 349

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.