Sequence Similarity Clusters for the Entities in PDB 2E9R

Entity #1 | Chains: A
5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-R(*CP*CP*C*GP*GP*GP*CP*CP*C)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: X
RNA-dependent RNA polymerase protein, length: 476 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5945
95 % 20 25 2135 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 20 25 2189
70 % 20 25 2181
50 % 20 25 2159
40 % 22 29 1365
30 % 90 99 342

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.