Sequence Similarity Clusters for the Entities in PDB 2DHB

Entity #1 | Chains: A
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67780
95 % 18 18 2806
90 % 18 18 2859
70 % 332 332 16
50 % 753 754 4
40 % 758 759 8
30 % 1224 1226 8
Entity #2 | Chains: B
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67246
95 % 18 18 2804 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 18 18 2857
70 % 346 346 14
50 % 754 754 4
40 % 759 759 8
30 % 1225 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures