Sequence Similarity Clusters for the Entities in PDB 2DHB

Entity #1 | Chains: A
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 2655
95 % 18 18 2857 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 18 18 2917
70 % 332 332 17
50 % 754 755 4
40 % 759 760 7
30 % 1297 1299 6
Entity #2 | Chains: B
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59895
95 % 18 18 2839 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 18 18 2897
70 % 347 347 14
50 % 755 755 4
40 % 760 760 7
30 % 1298 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures