Sequence Similarity Clusters for the Entities in PDB 2DHB

Entity #1 | Chains: A
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 17 2572
95 % 18 18 2760
90 % 18 18 2817
70 % 332 332 14
50 % 753 754 4
40 % 758 759 7
30 % 1279 1281 6
Entity #2 | Chains: B
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58123
95 % 18 18 2742 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 18 18 2797
70 % 346 346 11
50 % 754 754 4
40 % 759 759 7
30 % 1280 1281 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures