Sequence Similarity Clusters for the Entities in PDB 2DHB

Entity #1 | Chains: A
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63808
95 % 18 18 2608 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 18 18 2657
70 % 321 321 18
50 % 729 730 5
40 % 734 735 9
30 % 1173 1175 8
Entity #2 | Chains: B
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63307
95 % 18 18 2606 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 18 18 2655
70 % 335 335 14
50 % 730 730 5
40 % 735 735 9
30 % 1174 1175 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.