Sequence Similarity Clusters for the Entities in PDB 2D8W

Entity #1 | Chains: A
Cationic trypsin protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 376 405 37
95 % 427 464 20 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 427 464 21
70 % 486 548 19
50 % 563 699 14
40 % 1220 1721 4
30 % 1309 1871 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures