Sequence Similarity Clusters for the Entities in PDB 2CJM

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 272 365 23
95 % 281 380 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 281 380 38
70 % 281 380 44
50 % 294 405 68
40 % 303 462 49
30 % 2239 3966 2
Entity #2 | Chains: B,D
CYCLIN A2 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 86 169
95 % 39 105 155 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 43 109 160
70 % 43 109 176
50 % 43 109 219
40 % 43 109 238
30 % 46 115 242

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures