Sequence Similarity Clusters for the Entities in PDB 2CHA

Entity #1 | Chains: A,E
ALPHA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,F
ALPHA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 38 1065
95 % 38 38 1293 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 38 38 1320
70 % 40 40 1282
50 % 40 40 1320
40 % 46 46 1184
30 % 54 54 1021
Entity #3 | Chains: C,G
ALPHA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 38 1076
95 % 38 38 1305 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 38 38 1330
70 % 40 40 1291
50 % 47 47 1159
40 % 56 56 995
30 % 56 56 991

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures