Sequence Similarity Clusters for the Entities in PDB 2CGT

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L,M,N
60 KDA GROEL protein, length: 547 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 22 87
95 % 40 45 13
90 % 40 45 15
70 % 40 45 22
50 % 47 52 23
40 % 47 52 36
30 % 47 52 57
Entity #2 | Chains: O,P,Q,R,S,T,U
CAPSID ASSEMBLY PROTEIN GP31 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 4993
95 % 2 2 5319
90 % 2 2 5331
70 % 2 2 5195
50 % 2 2 4934
40 % 2 2 4650
30 % 2 2 4176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures