Sequence Similarity Clusters for the Entities in PDB 2C39

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 690
95 % 10 10 889 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 10 10 922
70 % 10 10 953
50 % 10 10 1000
40 % 19 19 752
30 % 19 20 733
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 723
95 % 10 10 890 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.6
PDBFlex
90 % 10 10 923
70 % 10 10 954
50 % 19 19 719
40 % 19 76 738
30 % 36 41 486

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.