Sequence Similarity Clusters for the Entities in PDB 2C39

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 725
95 % 10 10 937 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 10 10 967
70 % 10 10 997
50 % 10 10 1044
40 % 19 19 789
30 % 19 20 769
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 757
95 % 10 10 938 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.6
PDBFlex
90 % 10 10 968
70 % 10 10 999
50 % 19 19 753
40 % 19 20 774
30 % 37 42 491

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures