Sequence Similarity Clusters for the Entities in PDB 2C39

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 712
95 % 10 10 916 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 10 10 948
70 % 10 10 980
50 % 10 10 1026
40 % 19 19 778
30 % 19 20 756
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 745
95 % 10 10 917 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.6
PDBFlex
90 % 10 10 949
70 % 10 10 982
50 % 19 19 743
40 % 19 20 761
30 % 37 42 485

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures