Sequence Similarity Clusters for the Entities in PDB 2C1M

Entity #1 | Chains: A
IMPORTIN-ALPHA2 SUBUNIT protein, length: 424 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 67 531
95 % 47 67 720 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 55 78 605
70 % 55 78 645
50 % 64 102 444
40 % 66 106 457
30 % 66 106 454
Entity #2 | Chains: B
NUCLEOPORIN 50 KDA protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75699
95 % 1 1 52548
90 % 1 1 49800
70 % 1 1 43648
50 % 1 1 37209
40 % 1 1 32756
30 % 1 1 27696

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures