Sequence Similarity Clusters for the Entities in PDB 2C1M

Entity #1 | Chains: A
IMPORTIN-ALPHA2 SUBUNIT protein, length: 424 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 65 548
95 % 45 65 745 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 51 74 638
70 % 51 74 682
50 % 60 98 448
40 % 62 102 465
30 % 62 102 459
Entity #2 | Chains: B
NUCLEOPORIN 50 KDA protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74868
95 % 1 1 51983
90 % 1 1 49283
70 % 1 1 43207
50 % 1 1 36838
40 % 1 1 32425
30 % 1 1 27414

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures