Sequence Similarity Clusters for the Entities in PDB 2BRR

Entity #1 | Chains: H,Y
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB HEAVY CHAIN protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39620
95 % 1 1 30395 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 14 3562
70 % 463 2244 2
50 % 955 4633 1
40 % 955 4633 1
30 % 1049 5461 1
Entity #2 | Chains: L,X
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40462
95 % 1 20 2785 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 14 145 141
70 % 462 2287 1
50 % 956 4633 1
40 % 956 4633 1
30 % 1050 5461 1
Entity #3 | Chains: P
CLASS 1 OUTER MEMBRANE PROTEIN VARIABLE REGION 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.