Sequence Similarity Clusters for the Entities in PDB 2BRR

Entity #1 | Chains: H,Y
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB HEAVY CHAIN protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40483
95 % 1 1 31025 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 14 3650
70 % 490 2342 2
50 % 1012 4843 1
40 % 1012 4843 1
30 % 1110 5705 1
Entity #2 | Chains: L,X
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41348
95 % 1 20 2858 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 14 148 140
70 % 490 2392 1
50 % 1013 4843 1
40 % 1013 4843 1
30 % 1111 5705 1
Entity #3 | Chains: P
CLASS 1 OUTER MEMBRANE PROTEIN VARIABLE REGION 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures