Sequence Similarity Clusters for the Entities in PDB 2BRR

Entity #1 | Chains: H,Y
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB HEAVY CHAIN protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41284
95 % 1 1 31588 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 14 3741
70 % 519 2424 2
50 % 1071 5011 1
40 % 1071 5011 1
30 % 1206 5941 1
Entity #2 | Chains: L,X
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42163
95 % 1 20 2926 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 14 148 144
70 % 519 2474 1
50 % 1072 5011 1
40 % 1072 5011 1
30 % 1207 5941 1
Entity #3 | Chains: P
CLASS 1 OUTER MEMBRANE PROTEIN VARIABLE REGION 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures