Sequence Similarity Clusters for the Entities in PDB 2BRR

Entity #1 | Chains: H,Y
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB HEAVY CHAIN protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38995
95 % 1 1 29894 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 14 3515
70 % 459 2222 2
50 % 947 4587 1
40 % 947 4587 1
30 % 1035 5392 1
Entity #2 | Chains: L,X
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39825
95 % 1 20 2747 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 14 145 141
70 % 458 2264 1
50 % 948 4587 1
40 % 948 4587 1
30 % 1036 5392 1
Entity #3 | Chains: P
CLASS 1 OUTER MEMBRANE PROTEIN VARIABLE REGION 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.