Sequence Similarity Clusters for the Entities in PDB 2BFU

Entity #1 | Chains: L
COWPEA MOSAIC VIRUS, LARGE (L) SUBUNIT protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 11032
95 % 3 7 10678 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 3 7 10534
70 % 3 7 9956
50 % 5 11 6072
40 % 5 11 5650
30 % 5 11 4970
Entity #2 | Chains: S
COWPEA MOSAIC VIRUS, SMALL (S) SUBUNIT protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 17813
95 % 2 4 16408 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 2 4 16050
70 % 2 4 14975
50 % 2 4 13187
40 % 2 4 11824
30 % 2 4 10017

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures