Sequence Similarity Clusters for the Entities in PDB 2BFU

Entity #1 | Chains: L
COWPEA MOSAIC VIRUS, LARGE (L) SUBUNIT protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10582
95 % 3 7 10590 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 3 7 10463
70 % 3 7 9929
50 % 5 10 6325
40 % 5 10 5901
30 % 5 10 5307
Entity #2 | Chains: S
COWPEA MOSAIC VIRUS, SMALL (S) SUBUNIT protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22707
95 % 2 4 19577 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 2 4 19054
70 % 2 4 17597
50 % 2 4 15260
40 % 2 4 13572
30 % 2 4 11610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures