Sequence Similarity Clusters for the Entities in PDB 2BFU

Entity #1 | Chains: L
COWPEA MOSAIC VIRUS, LARGE (L) SUBUNIT protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10156
95 % 3 7 10209 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 3 7 10086
70 % 3 7 9580
50 % 5 10 6108
40 % 5 10 5704
30 % 5 10 5124
Entity #2 | Chains: S
COWPEA MOSAIC VIRUS, SMALL (S) SUBUNIT protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21823
95 % 2 4 18889 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 2 4 18407
70 % 2 4 16996
50 % 2 4 14765
40 % 2 4 13153
30 % 2 4 11262

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.