Sequence Similarity Clusters for the Entities in PDB 2BCJ

Entity #1 | Chains: A
G-protein-coupled receptor kinase 2 protein, length: 689 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5529
95 % 21 25 2225 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 21 25 2287
70 % 21 25 2284
50 % 21 25 2267
40 % 21 25 2242
30 % 21 25 2107
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45873
95 % 31 41 1214 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 31 41 1231
70 % 31 41 1260
50 % 32 42 1269
40 % 32 42 1262
30 % 32 42 1263
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 31 1543
95 % 21 31 1816 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 21 31 1856
70 % 21 31 1871
50 % 21 31 1908
40 % 21 31 1897
30 % 21 31 1816
Entity #4 | Chains: Q
Guanine nucleotide-binding protein G(i) subunit alpha-1, Guanine nucleotide-binding protein G(q) subunit alpha chimera protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 22132
95 % 6 11 4440 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 6 11 4331
70 % 6 11 4319
50 % 64 77 451
40 % 82 103 383
30 % 82 103 386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures