Sequence Similarity Clusters for the Entities in PDB 2BCJ

Entity #1 | Chains: A
G-protein-coupled receptor kinase 2 protein, length: 689 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3660
95 % 17 21 2335
90 % 17 21 2399
70 % 17 21 2385
50 % 17 21 2377
40 % 17 21 2356
30 % 17 21 2257
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1149
95 % 27 35 1330 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 27 35 1355
70 % 27 35 1371
50 % 28 36 1351
40 % 28 38 1300
30 % 28 38 1278
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 25 1704
95 % 17 25 2243 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 17 25 2310
70 % 17 25 2309
50 % 17 25 2285
40 % 17 25 2268
30 % 17 25 2170
Entity #4 | Chains: Q
Guanine nucleotide-binding protein G(i) subunit alpha-1, Guanine nucleotide-binding protein G(q) subunit alpha chimera protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18101
95 % 6 11 3889 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.1
PDBFlex
90 % 6 11 3926
70 % 6 11 3869
50 % 64 77 413
40 % 79 97 347
30 % 81 99 339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.