Sequence Similarity Clusters for the Entities in PDB 2BCJ

Entity #1 | Chains: A
G-protein-coupled receptor kinase 2 protein, length: 689 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3814
95 % 17 21 2401 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 17 21 2467
70 % 17 21 2453
50 % 17 21 2444
40 % 17 21 2422
30 % 17 21 2310
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1197
95 % 27 35 1361 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 27 35 1387
70 % 27 35 1406
50 % 28 36 1382
40 % 28 38 1331
30 % 28 38 1307
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 25 1757
95 % 17 25 2304 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 17 25 2372
70 % 17 25 2370
50 % 17 25 2348
40 % 17 25 2335
30 % 17 25 2225
Entity #4 | Chains: Q
Guanine nucleotide-binding protein G(i) subunit alpha-1, Guanine nucleotide-binding protein G(q) subunit alpha chimera protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18649
95 % 6 11 3999 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 6 11 4040
70 % 6 11 3986
50 % 64 77 432
40 % 79 97 380
30 % 81 99 363

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures