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30S ribosomal subunit, tRNAs and mRNA from a crystal structure of the whole ribosomal complex with a stop codon in the A-site. This file contains the 30S subunit, tRNAs and mRNA from a crystal structure of the whole ribosomal complex with a stop codon in the A-site and is described in remark 400.
Sequence Clustering and Redundancy Reduction Results
2B9O
Sequence Clusters for the Sequence Entities in PDB 2B9O
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 259 20
95% 241 260 37
90% 241 260 39
70% 241 260 50
50% 268 308 57
40% 268 309 73
30% 268 309 97
Entity #11: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 255 23
95% 237 255 41
90% 241 259 40
70% 241 259 52
50% 311 369 36
40% 312 371 48
30% 323 408 50
Entity #12: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 113 133
95% 239 255 45
90% 239 255 48
70% 239 255 60
50% 307 363 41
40% 307 363 56
30% 317 399 58
Entity #13: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 252 29
95% 239 254 48
90% 239 254 51
70% 239 254 63
50% 313 369 34
40% 313 369 47
30% 313 374 66
Entity #14: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 255 27
95% 239 255 44
90% 239 255 47
70% 239 255 59
50% 307 363 42
40% 319 403 39
30% 319 403 53
Entity #15: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 224 37
95% 239 262 36
90% 239 262 38
70% 307 375 24
50% 307 375 33
40% 307 375 46
30% 307 375 71
Entity #16: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 256 24
95% 239 256 42
90% 239 256 45
70% 239 256 57
50% 307 365 39
40% 307 365 53
30% 317 401 55
Entity #17: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 254 28
95% 239 254 49
90% 239 254 52
70% 239 254 64
50% 239 254 97
40% 239 254 122
30% 239 254 144
Entity #18: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 258 21
95% 244 263 35
90% 244 263 37
70% 244 263 48
50% 315 376 32
40% 315 376 44
30% 315 376 69
Entity #19: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 250 30
95% 239 255 46
90% 239 255 49
70% 239 255 61
50% 239 255 95
40% 239 255 120
30% 307 363 78
Entity #2: Chains: V - P-site tRNA (Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 92 218
95% 234 249 51
90% 238 253 53
70% 238 253 65
50% 238 253 98
40% 238 253 124
30% 238 253 146
Entity #21: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 49 460
95% 214 221 64
90% 214 221 68
70% 214 221 81
50% 214 221 116
40% 214 221 144
30% 214 221 166
Entity #22: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 223 38
95% 214 223 63
90% 214 223 67
70% 214 223 80
50% 309 366 38
40% 309 366 52
30% 309 366 74
Entity #23: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 61 356
95% 239 254 47
90% 239 254 50
70% 239 254 62
50% 239 254 96
40% 239 254 121
30% 239 254 143
Entity #24: Chains: U - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 238 34
95% 230 238 55
90% 230 238 59
70% 230 238 71
50% 230 238 110
40% 230 238 133
30% 230 238 153
Entity #3: Chains: W - E-site tRNA (Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: X - 5'-D(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 255 25
95% 239 256 39
90% 239 256 43
70% 239 256 55
50% 239 256 94
40% 307 363 55
30% 307 363 77
Entity #6: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 219 39
95% 212 219 66
90% 212 219 70
70% 212 219 83
50% 256 282 81
40% 256 282 101
30% 256 282 123
Entity #7: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 248 32
95% 240 256 40
90% 240 256 44
70% 240 256 56
50% 308 363 40
40% 308 364 54
30% 308 364 75
Entity #8: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 255 26
95% 240 255 43
90% 240 255 46
70% 240 255 58
50% 309 367 37
40% 309 367 51
30% 309 369 72
Entity #9: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 242 260 18
95% 248 266 34
90% 248 266 36
70% 248 266 47
50% 248 266 88
40% 248 266 110
30% 274 313 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.