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12-subunit RNA Polymerase II
Sequence Clustering and Redundancy Reduction Results
2B8K
Sequence Clusters for the Sequence Entities in PDB 2B8K
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 103 204
95% 98 103 287
90% 98 103 301
70% 98 103 323
50% 99 104 347
40% 99 104 377
30% 99 104 380
Entity #10: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 109 189
95% 102 109 263
90% 102 109 276
70% 103 110 289
50% 111 118 273
40% 111 118 310
30% 111 118 319
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 105 200
95% 98 105 285
90% 98 105 296
70% 98 105 318
50% 98 105 350
40% 99 106 367
30% 99 106 372
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 108 191
95% 102 108 266
90% 102 108 280
70% 102 108 300
50% 102 108 328
40% 102 108 361
30% 102 108 363
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 104 201
95% 98 105 283
90% 98 105 295
70% 98 105 317
50% 99 106 334
40% 107 114 320
30% 107 114 329
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 103 205
95% 98 103 288
90% 98 103 302
70% 98 103 324
50% 99 104 349
40% 99 104 379
30% 99 104 384
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 51 459
95% 46 51 666
90% 46 51 699
70% 46 52 747
50% 46 52 838
40% 46 52 859
30% 46 52 860
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 110 184
95% 103 110 256
90% 103 110 268
70% 103 110 292
50% 104 111 310
40% 104 111 344
30% 104 111 352
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 107 192
95% 102 107 272
90% 102 107 285
70% 102 107 305
50% 103 109 317
40% 103 109 349
30% 103 109 357
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49228
95% 1 1 34634
90% 1 1 33151
70% 1 1 29528
50% 1 1 25383
40% 1 1 22490
30% 1 1 19116
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 109 188
95% 102 110 257
90% 102 110 269
70% 102 110 293
50% 102 110 318
40% 102 110 350
30% 103 112 349
Entity #9: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 104 203
95% 97 104 286
90% 97 104 300
70% 97 104 322
50% 98 105 343
40% 98 105 374
30% 98 105 377
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.