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12-subunit RNA Polymerase II
Sequence Clustering and Redundancy Reduction Results
2B8K
Sequence Clusters for the Sequence Entities in PDB 2B8K
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 101 206
95% 96 101 290
90% 96 101 305
70% 96 101 324
50% 97 102 349
40% 97 102 376
30% 97 102 381
Entity #10: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 107 188
95% 100 107 266
90% 100 107 278
70% 101 108 289
50% 109 116 275
40% 109 116 305
30% 109 116 321
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 103 201
95% 96 103 286
90% 96 103 301
70% 96 103 318
50% 96 103 353
40% 97 104 370
30% 97 104 375
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 106 190
95% 100 106 268
90% 100 106 282
70% 100 106 300
50% 100 106 328
40% 100 106 358
30% 100 106 366
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 102 203
95% 96 103 283
90% 96 103 297
70% 96 103 316
50% 97 104 340
40% 105 112 319
30% 105 112 330
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 101 207
95% 96 101 291
90% 96 101 306
70% 96 101 325
50% 97 102 351
40% 97 102 379
30% 97 102 385
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 51 452
95% 46 51 656
90% 46 51 689
70% 46 52 733
50% 46 52 822
40% 46 52 841
30% 46 52 847
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 108 186
95% 101 108 259
90% 101 108 272
70% 101 108 291
50% 102 109 309
40% 102 109 337
30% 102 109 349
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 105 194
95% 100 105 277
90% 100 105 289
70% 100 105 307
50% 101 107 320
40% 101 107 352
30% 101 107 357
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48474
95% 1 1 34127
90% 1 1 32673
70% 1 1 29126
50% 1 1 25050
40% 1 1 22188
30% 1 1 18869
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 107 187
95% 100 108 260
90% 100 108 273
70% 100 108 292
50% 100 108 321
40% 100 108 353
30% 101 110 347
Entity #9: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 102 205
95% 95 102 289
90% 95 102 304
70% 95 102 323
50% 96 103 347
40% 96 103 374
30% 96 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.