Sequence Similarity Clusters for the Entities in PDB 2B8K

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 115 221
95 % 106 115 308
90 % 106 115 325
70 % 106 115 364
50 % 107 126 371
40 % 107 126 402
30 % 107 126 402
Entity #10 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 137 178
95 % 111 137 234
90 % 111 137 247
70 % 112 148 262
50 % 120 156 255
40 % 120 156 275
30 % 120 156 280
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 117 216
95 % 106 117 300
90 % 106 117 317
70 % 106 117 354
50 % 106 117 415
40 % 107 119 435
30 % 107 119 436
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 133 180
95 % 109 133 242
90 % 109 133 254
70 % 109 133 287
50 % 109 133 323
40 % 109 133 343
30 % 109 133 347
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 116 219
95 % 106 117 297
90 % 106 117 313
70 % 106 117 351
50 % 107 128 361
40 % 115 136 327
30 % 115 139 330
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 112 225
95 % 104 112 313
90 % 104 112 332
70 % 104 112 369
50 % 105 114 419
40 % 105 114 455
30 % 105 114 451
Entity #4 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 61 544
95 % 53 61 756
90 % 53 61 784
70 % 53 62 809
50 % 54 64 817
40 % 54 64 847
30 % 54 64 833
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 138 174
95 % 112 138 231
90 % 112 138 243
70 % 112 138 277
50 % 113 140 304
40 % 113 149 299
30 % 113 149 312
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 132 182
95 % 109 132 246
90 % 109 132 257
70 % 109 132 289
50 % 110 144 296
40 % 110 144 312
30 % 110 144 324
Entity #7 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57690
95 % 1 1 40378
90 % 1 1 38507
70 % 1 1 34075
50 % 1 1 29130
40 % 1 1 25706
30 % 1 1 21784
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 137 177
95 % 111 138 232
90 % 111 138 244
70 % 111 138 279
50 % 111 138 312
40 % 111 138 326
30 % 112 150 309
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 116 220
95 % 105 116 307
90 % 105 116 324
70 % 105 116 362
50 % 106 118 407
40 % 106 118 438
30 % 106 121 428

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.