Sequence Similarity Clusters for the Entities in PDB 2B8K

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 113 203
95 % 105 113 285
90 % 105 113 299
70 % 105 113 323
50 % 106 123 316
40 % 106 123 342
30 % 106 123 353
Entity #10 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 123 159
95 % 110 123 224
90 % 110 123 235
70 % 111 133 215
50 % 119 141 243
40 % 119 141 268
30 % 119 141 283
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 115 200
95 % 105 115 282
90 % 105 115 295
70 % 105 115 321
50 % 105 115 345
40 % 106 116 364
30 % 106 116 375
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 119 166
95 % 108 119 236
90 % 108 119 245
70 % 108 119 282
50 % 108 119 315
40 % 108 119 341
30 % 108 119 352
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 114 201
95 % 105 115 278
90 % 105 115 291
70 % 105 115 317
50 % 106 125 308
40 % 114 133 294
30 % 114 136 302
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 110 207
95 % 103 110 294
90 % 103 110 309
70 % 103 110 330
50 % 104 111 349
40 % 104 111 380
30 % 104 111 388
Entity #4 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 59 433
95 % 52 59 639
90 % 52 59 685
70 % 52 60 699
50 % 53 62 751
40 % 53 62 780
30 % 53 62 788
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 124 152
95 % 111 124 214
90 % 111 124 226
70 % 111 124 258
50 % 112 125 294
40 % 112 134 293
30 % 112 134 314
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 118 168
95 % 108 118 241
90 % 108 118 251
70 % 108 118 286
50 % 109 129 280
40 % 109 129 308
30 % 109 129 328
Entity #7 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53621
95 % 1 1 37597
90 % 1 1 35894
70 % 1 1 31848
50 % 1 1 27293
40 % 1 1 24130
30 % 1 1 20446
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 123 158
95 % 110 124 218
90 % 110 124 229
70 % 110 124 262
50 % 110 124 305
40 % 110 124 326
30 % 111 135 308
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 114 202
95 % 104 114 284
90 % 104 114 298
70 % 104 114 322
50 % 105 115 341
40 % 105 115 368
30 % 105 118 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.