Sequence Similarity Clusters for the Entities in PDB 2B8K

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 113 203
95 % 105 113 285
90 % 105 113 299
70 % 105 113 321
50 % 106 123 314
40 % 106 123 342
30 % 106 123 351
Entity #10 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 123 159
95 % 110 123 222
90 % 110 123 234
70 % 111 133 214
50 % 119 141 241
40 % 119 141 267
30 % 119 141 283
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 115 199
95 % 105 115 280
90 % 105 115 293
70 % 105 115 318
50 % 105 115 343
40 % 106 116 361
30 % 106 116 372
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 119 164
95 % 108 119 234
90 % 108 119 244
70 % 108 119 278
50 % 108 119 313
40 % 108 119 341
30 % 108 119 350
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 114 200
95 % 105 115 277
90 % 105 115 290
70 % 105 115 316
50 % 106 125 308
40 % 114 133 292
30 % 114 136 300
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 110 207
95 % 103 110 294
90 % 103 110 308
70 % 103 110 329
50 % 104 111 346
40 % 104 111 379
30 % 104 111 384
Entity #4 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 59 412
95 % 52 59 610
90 % 52 59 647
70 % 52 60 678
50 % 53 62 745
40 % 53 62 773
30 % 53 62 781
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 124 152
95 % 111 124 212
90 % 111 124 224
70 % 111 124 257
50 % 112 125 293
40 % 112 134 291
30 % 112 134 311
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 118 166
95 % 108 118 239
90 % 108 118 250
70 % 108 118 282
50 % 109 129 278
40 % 109 129 305
30 % 109 129 326
Entity #7 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53242
95 % 1 1 37345
90 % 1 1 35650
70 % 1 1 31640
50 % 1 1 27115
40 % 1 1 23980
30 % 1 1 20317
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 123 158
95 % 110 124 216
90 % 110 124 227
70 % 110 124 261
50 % 110 124 304
40 % 110 124 326
30 % 111 135 306
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 114 202
95 % 104 114 284
90 % 104 114 298
70 % 104 114 320
50 % 105 115 339
40 % 105 115 365
30 % 105 118 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.