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30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex. This file contains the 30S subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF1 and is described in remark 400.
Sequence Clustering and Redundancy Reduction Results
2B64
Sequence Clusters for the Sequence Entities in PDB 2B64
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 272 19
95% 252 273 36
90% 252 273 38
70% 252 273 49
50% 279 321 56
40% 279 322 73
30% 279 322 96
Entity #11: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 248 268 21
95% 248 268 40
90% 252 272 39
70% 252 272 50
50% 322 382 35
40% 323 384 46
30% 334 421 51
Entity #12: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 113 135
95% 250 268 44
90% 250 268 46
70% 250 268 56
50% 318 376 40
40% 318 376 54
30% 328 412 57
Entity #13: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 248 265 27
95% 250 267 47
90% 250 267 49
70% 250 267 59
50% 324 382 34
40% 324 382 45
30% 324 387 65
Entity #14: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 268 25
95% 250 268 43
90% 250 268 45
70% 250 268 55
50% 318 376 41
40% 330 416 40
30% 330 416 52
Entity #15: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 237 35
95% 250 275 35
90% 250 275 37
70% 318 388 24
50% 318 388 33
40% 318 388 44
30% 318 388 68
Entity #16: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 269 22
95% 250 269 41
90% 250 269 43
70% 250 269 53
50% 318 378 38
40% 318 378 51
30% 328 414 55
Entity #17: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 267 26
95% 250 267 48
90% 250 267 50
70% 250 267 60
50% 250 267 93
40% 250 267 119
30% 250 267 140
Entity #18: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 271 20
95% 255 276 32
90% 255 276 34
70% 255 276 47
50% 326 389 32
40% 326 389 43
30% 326 389 67
Entity #19: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 263 28
95% 250 268 45
90% 250 268 47
70% 250 268 57
50% 250 268 91
40% 250 268 117
30% 318 376 76
Entity #2: Chains: V - P-site tRNA (Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 92 220
95% 245 262 49
90% 249 266 51
70% 249 266 61
50% 249 266 94
40% 249 266 120
30% 249 266 142
Entity #21: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 49 466
95% 223 232 61
90% 223 232 64
70% 223 232 78
50% 223 232 113
40% 223 232 138
30% 223 232 158
Entity #22: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 234 37
95% 223 234 59
90% 223 234 63
70% 223 234 77
50% 320 379 37
40% 320 379 49
30% 320 379 72
Entity #23: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 61 362
95% 250 267 46
90% 250 267 48
70% 250 267 58
50% 250 267 92
40% 250 267 118
30% 250 267 139
Entity #24: Chains: U - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 249 33
95% 239 249 52
90% 239 249 55
70% 239 249 66
50% 239 249 103
40% 239 249 130
30% 239 249 150
Entity #25: Chains: Y - Peptide chain release factor 1 protein, length: 354 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 10821
95% 5 5 10488
90% 5 5 10341
70% 5 5 9805
50% 5 5 8828
40% 18 22 1843
30% 18 22 1774
Entity #3: Chains: W - E-site tRNA (Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: X - 5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 268 23
95% 250 269 38
90% 250 269 41
70% 250 269 51
50% 250 269 90
40% 318 376 53
30% 318 376 75
Entity #6: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 230 38
95% 221 230 62
90% 221 230 65
70% 221 230 79
50% 265 293 73
40% 265 293 97
30% 265 293 118
Entity #7: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 248 261 29
95% 251 269 39
90% 251 269 42
70% 251 269 52
50% 319 376 39
40% 319 377 52
30% 319 377 74
Entity #8: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 268 24
95% 251 268 42
90% 251 268 44
70% 251 268 54
50% 320 380 36
40% 320 380 48
30% 320 382 70
Entity #9: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 273 18
95% 259 279 29
90% 259 279 30
70% 259 279 44
50% 259 279 82
40% 259 279 106
30% 285 326 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.