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30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex. This file contains the 30S subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF1 and is described in remark 400.
Sequence Clustering and Redundancy Reduction Results
2B64
Sequence Clusters for the Sequence Entities in PDB 2B64
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 259 20
95% 239 260 37
90% 239 260 39
70% 239 260 50
50% 266 308 57
40% 266 309 73
30% 266 309 97
Entity #11: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 255 23
95% 235 255 41
90% 239 259 40
70% 239 259 52
50% 309 369 36
40% 310 371 48
30% 321 408 50
Entity #12: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 113 133
95% 237 255 45
90% 237 255 48
70% 237 255 60
50% 305 363 41
40% 305 363 56
30% 315 399 58
Entity #13: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 252 29
95% 237 254 48
90% 237 254 51
70% 237 254 63
50% 311 369 34
40% 311 369 47
30% 311 374 66
Entity #14: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 255 27
95% 237 255 44
90% 237 255 47
70% 237 255 59
50% 305 363 42
40% 317 403 39
30% 317 403 53
Entity #15: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 224 37
95% 237 262 36
90% 237 262 38
70% 305 375 24
50% 305 375 33
40% 305 375 46
30% 305 375 71
Entity #16: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 256 24
95% 237 256 42
90% 237 256 45
70% 237 256 57
50% 305 365 39
40% 305 365 53
30% 315 401 55
Entity #17: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 254 28
95% 237 254 49
90% 237 254 52
70% 237 254 64
50% 237 254 97
40% 237 254 122
30% 237 254 144
Entity #18: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 258 21
95% 242 263 35
90% 242 263 37
70% 242 263 48
50% 313 376 32
40% 313 376 44
30% 313 376 69
Entity #19: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 250 30
95% 237 255 46
90% 237 255 49
70% 237 255 61
50% 237 255 95
40% 237 255 120
30% 305 363 78
Entity #2: Chains: V - P-site tRNA (Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 92 218
95% 232 249 51
90% 236 253 53
70% 236 253 65
50% 236 253 98
40% 236 253 124
30% 236 253 146
Entity #21: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 49 460
95% 212 221 64
90% 212 221 68
70% 212 221 81
50% 212 221 116
40% 212 221 144
30% 212 221 166
Entity #22: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 223 38
95% 212 223 63
90% 212 223 67
70% 212 223 80
50% 307 366 38
40% 307 366 52
30% 307 366 74
Entity #23: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 61 356
95% 237 254 47
90% 237 254 50
70% 237 254 62
50% 237 254 96
40% 237 254 121
30% 237 254 143
Entity #24: Chains: U - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 238 34
95% 228 238 55
90% 228 238 59
70% 228 238 71
50% 228 238 110
40% 228 238 133
30% 228 238 153
Entity #25: Chains: Y - Peptide chain release factor 1 protein, length: 354 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 10685
95% 5 5 10351
90% 5 5 10210
70% 5 5 9681
50% 5 5 8722
40% 18 22 1823
30% 18 22 1760
Entity #3: Chains: W - E-site tRNA (Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: X - 5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 255 25
95% 237 256 39
90% 237 256 43
70% 237 256 55
50% 237 256 94
40% 305 363 55
30% 305 363 77
Entity #6: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 210 219 39
95% 210 219 66
90% 210 219 70
70% 210 219 83
50% 254 282 81
40% 254 282 101
30% 254 282 123
Entity #7: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 248 32
95% 238 256 40
90% 238 256 44
70% 238 256 56
50% 306 363 40
40% 306 364 54
30% 306 364 75
Entity #8: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 255 26
95% 238 255 43
90% 238 255 46
70% 238 255 58
50% 307 367 37
40% 307 367 51
30% 307 369 72
Entity #9: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 260 18
95% 246 266 34
90% 246 266 36
70% 246 266 47
50% 246 266 88
40% 246 266 110
30% 272 313 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.