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Complete RNA Polymerase II-RNA inhibitor complex
Sequence Clustering and Redundancy Reduction Results
2B63
Sequence Clusters for the Sequence Entities in PDB 2B63
Entity #1: Chains: R - 31-MER rna, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 102 203
95% 80 102 287
90% 80 102 301
70% 80 102 317
50% 80 103 346
40% 80 103 372
30% 80 103 379
Entity #11: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 107 186
95% 85 107 262
90% 85 107 274
70% 85 108 284
50% 90 116 274
40% 90 116 303
30% 90 116 320
Entity #12: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 103 200
95% 81 103 282
90% 81 103 296
70% 81 103 314
50% 81 103 353
40% 81 104 368
30% 81 104 375
Entity #13: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 106 189
95% 85 106 264
90% 85 106 278
70% 85 106 296
50% 85 106 328
40% 85 106 355
30% 85 106 364
Entity #2: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 101 204
95% 81 101 288
90% 81 101 302
70% 81 101 318
50% 81 102 348
40% 81 102 374
30% 81 102 381
Entity #3: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 102 201
95% 81 103 278
90% 81 103 291
70% 81 103 310
50% 81 104 340
40% 86 112 314
30% 86 112 326
Entity #4: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 101 205
95% 81 101 290
90% 81 101 304
70% 81 101 320
50% 81 102 350
40% 81 102 377
30% 81 102 385
Entity #5: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 51 447
95% 40 51 647
90% 40 51 679
70% 40 52 725
50% 40 52 814
40% 40 52 833
30% 40 52 838
Entity #6: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 108 183
95% 86 108 255
90% 86 108 267
70% 86 108 287
50% 86 109 306
40% 86 109 332
30% 86 109 347
Entity #7: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 105 193
95% 85 105 273
90% 85 105 285
70% 85 105 302
50% 85 107 318
40% 85 107 347
30% 85 107 354
Entity #8: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 53 423
95% 42 53 615
90% 42 53 644
70% 42 53 698
50% 43 55 686
40% 43 55 711
30% 43 55 712
Entity #9: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 107 185
95% 85 108 256
90% 85 108 269
70% 85 108 288
50% 85 108 319
40% 85 108 348
30% 85 110 345
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.