Sequence Similarity Clusters for the Entities in PDB 2B63

Entity #1 | Chains: R
31-MER rna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 114 202
95 % 89 114 284
90 % 89 114 298
70 % 89 114 322
50 % 89 115 341
40 % 89 115 368
30 % 89 118 371
Entity #11 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 123 159
95 % 94 123 224
90 % 94 123 235
70 % 94 133 215
50 % 99 141 243
40 % 99 141 268
30 % 99 141 283
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 115 200
95 % 90 115 282
90 % 90 115 295
70 % 90 115 321
50 % 90 115 345
40 % 90 116 364
30 % 90 116 375
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 119 166
95 % 92 119 236
90 % 92 119 245
70 % 92 119 282
50 % 92 119 315
40 % 92 119 341
30 % 92 119 352
Entity #2 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 113 203
95 % 90 113 285
90 % 90 113 299
70 % 90 113 323
50 % 90 123 316
40 % 90 123 342
30 % 90 123 353
Entity #3 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 114 201
95 % 90 115 278
90 % 90 115 291
70 % 90 115 317
50 % 90 125 308
40 % 95 133 294
30 % 95 136 302
Entity #4 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 110 207
95 % 88 110 294
90 % 88 110 309
70 % 88 110 330
50 % 88 111 349
40 % 88 111 380
30 % 88 111 388
Entity #5 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 59 433
95 % 46 59 639
90 % 46 59 685
70 % 46 60 699
50 % 47 62 751
40 % 47 62 780
30 % 47 62 788
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 124 152
95 % 95 124 214
90 % 95 124 226
70 % 95 124 258
50 % 95 125 294
40 % 95 134 293
30 % 95 134 314
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 118 168
95 % 92 118 241
90 % 92 118 251
70 % 92 118 286
50 % 92 129 280
40 % 92 129 308
30 % 92 129 328
Entity #8 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 62 387
95 % 48 62 572
90 % 48 62 604
70 % 48 62 653
50 % 49 73 562
40 % 49 73 595
30 % 49 73 603
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 123 158
95 % 94 124 218
90 % 94 124 229
70 % 94 124 262
50 % 94 124 305
40 % 94 124 326
30 % 94 135 308

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.