POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

Complete RNA Polymerase II-RNA inhibitor complex
Sequence Clustering and Redundancy Reduction Results
2B63
Sequence Clusters for the Sequence Entities in PDB 2B63
Entity #1: Chains: R - 31-MER rna, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 102 201
95% 80 102 284
90% 80 102 298
70% 80 102 314
50% 80 103 344
40% 80 103 367
30% 80 103 374
Entity #11: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 107 178
95% 85 107 253
90% 85 107 265
70% 85 108 270
50% 90 116 274
40% 90 116 302
30% 90 116 317
Entity #12: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 103 197
95% 81 103 278
90% 81 103 292
70% 81 103 309
50% 81 103 351
40% 81 104 364
30% 81 104 371
Entity #13: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 106 185
95% 85 106 261
90% 85 106 275
70% 85 106 292
50% 85 106 325
40% 85 106 349
30% 85 106 358
Entity #2: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 101 202
95% 81 101 285
90% 81 101 299
70% 81 101 315
50% 81 102 346
40% 81 102 369
30% 81 102 376
Entity #3: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 102 199
95% 81 103 274
90% 81 103 287
70% 81 103 306
50% 81 104 338
40% 86 112 313
30% 86 112 322
Entity #4: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 101 203
95% 81 101 287
90% 81 101 301
70% 81 101 317
50% 81 102 348
40% 81 102 372
30% 81 102 380
Entity #5: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 51 440
95% 40 51 639
90% 40 51 672
70% 40 52 717
50% 40 52 804
40% 40 52 825
30% 40 52 830
Entity #6: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 108 167
95% 86 108 240
90% 86 108 252
70% 86 108 274
50% 86 109 302
40% 86 109 325
30% 86 109 342
Entity #7: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 105 190
95% 85 105 269
90% 85 105 281
70% 85 105 297
50% 85 107 312
40% 85 107 339
30% 85 107 348
Entity #8: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 53 418
95% 42 53 605
90% 42 53 635
70% 42 53 690
50% 43 55 677
40% 43 55 705
30% 43 55 703
Entity #9: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 107 172
95% 85 108 241
90% 85 108 254
70% 85 108 275
50% 85 108 313
40% 85 108 340
30% 85 110 341
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.