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Complete RNA Polymerase II-RNA inhibitor complex
Sequence Clustering and Redundancy Reduction Results
2B63
Sequence Clusters for the Sequence Entities in PDB 2B63
Entity #1: Chains: R - 31-MER rna, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 104 205
95% 82 104 288
90% 82 104 302
70% 82 104 324
50% 82 105 345
40% 82 105 377
30% 82 105 382
Entity #11: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 109 189
95% 87 109 263
90% 87 109 276
70% 87 110 292
50% 92 118 276
40% 92 118 312
30% 92 118 321
Entity #12: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 105 201
95% 83 105 286
90% 83 105 297
70% 83 105 320
50% 83 105 352
40% 83 106 370
30% 83 106 376
Entity #13: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 108 192
95% 87 108 266
90% 87 108 280
70% 87 108 301
50% 87 108 329
40% 87 108 363
30% 87 108 366
Entity #2: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 103 206
95% 83 103 289
90% 83 103 303
70% 83 103 325
50% 83 104 348
40% 83 104 379
30% 83 104 384
Entity #3: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 104 203
95% 83 105 285
90% 83 105 296
70% 83 105 319
50% 83 106 337
40% 88 114 321
30% 88 114 330
Entity #4: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 103 207
95% 83 103 290
90% 83 103 304
70% 83 103 326
50% 83 104 350
40% 83 104 381
30% 83 104 387
Entity #5: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 51 468
95% 40 51 676
90% 40 51 712
70% 40 52 757
50% 40 52 848
40% 40 52 869
30% 40 52 869
Entity #6: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 110 184
95% 88 110 257
90% 88 110 270
70% 88 110 294
50% 88 111 313
40% 88 111 346
30% 88 111 354
Entity #7: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 107 193
95% 87 107 272
90% 87 107 285
70% 87 107 306
50% 87 109 319
40% 87 109 350
30% 87 109 359
Entity #8: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 53 441
95% 42 53 642
90% 42 53 674
70% 42 53 727
50% 43 55 720
40% 43 55 748
30% 43 55 746
Entity #9: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 109 188
95% 87 110 258
90% 87 110 271
70% 87 110 295
50% 87 110 320
40% 87 110 351
30% 87 112 351
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.