Sequence Similarity Clusters for the Entities in PDB 2B63

Entity #1 | Chains: R
31-MER rna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 115 207
95 % 89 115 295
90 % 89 115 307
70 % 89 115 335
50 % 89 116 365
40 % 89 116 401
30 % 89 119 386
Entity #11 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 128 174
95 % 94 128 239
90 % 94 128 249
70 % 94 138 263
50 % 99 146 259
40 % 99 146 279
30 % 99 146 289
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 116 204
95 % 90 116 291
90 % 90 116 303
70 % 90 116 330
50 % 90 116 369
40 % 90 117 393
30 % 90 117 393
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 124 180
95 % 92 124 249
90 % 92 124 256
70 % 92 124 292
50 % 92 124 323
40 % 92 124 345
30 % 92 124 352
Entity #2 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 114 209
95 % 90 114 296
90 % 90 114 308
70 % 90 114 336
50 % 90 124 332
40 % 90 124 359
30 % 90 124 366
Entity #3 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 115 205
95 % 90 116 286
90 % 90 116 297
70 % 90 116 326
50 % 90 126 328
40 % 95 134 317
30 % 95 137 321
Entity #4 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 111 211
95 % 88 111 305
90 % 88 111 318
70 % 88 111 344
50 % 88 112 388
40 % 88 112 427
30 % 88 112 419
Entity #5 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 60 493
95 % 46 60 697
90 % 46 60 728
70 % 46 61 753
50 % 47 63 771
40 % 47 63 801
30 % 47 63 802
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 129 170
95 % 95 129 233
90 % 95 129 242
70 % 95 129 275
50 % 95 130 304
40 % 95 139 306
30 % 95 139 315
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 123 182
95 % 92 123 254
90 % 92 123 262
70 % 92 123 297
50 % 92 134 297
40 % 92 134 320
30 % 92 134 332
Entity #8 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 63 445
95 % 48 63 635
90 % 48 63 671
70 % 48 63 711
50 % 49 74 584
40 % 49 74 621
30 % 49 74 630
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 128 173
95 % 94 129 236
90 % 94 129 245
70 % 94 129 277
50 % 94 129 312
40 % 94 129 333
30 % 94 140 311

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.