Sequence Similarity Clusters for the Entities in PDB 2B63

Entity #1 | Chains: R
31-MER rna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 115 205
95 % 89 115 290
90 % 89 115 303
70 % 89 115 328
50 % 89 116 350
40 % 89 116 382
30 % 89 119 378
Entity #11 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 125 174
95 % 94 125 238
90 % 94 125 248
70 % 94 135 258
50 % 99 143 253
40 % 99 143 272
30 % 99 143 288
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 116 202
95 % 90 116 287
90 % 90 116 299
70 % 90 116 324
50 % 90 116 353
40 % 90 117 378
30 % 90 117 383
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 121 181
95 % 92 121 251
90 % 92 121 259
70 % 92 121 297
50 % 92 121 324
40 % 92 121 348
30 % 92 121 354
Entity #2 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 114 206
95 % 90 114 291
90 % 90 114 304
70 % 90 114 329
50 % 90 124 328
40 % 90 124 354
30 % 90 124 361
Entity #3 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 115 203
95 % 90 116 284
90 % 90 116 295
70 % 90 116 321
50 % 90 126 322
40 % 95 134 310
30 % 95 137 311
Entity #4 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 111 209
95 % 88 111 299
90 % 88 111 314
70 % 88 111 335
50 % 88 112 360
40 % 88 112 396
30 % 88 112 396
Entity #5 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 60 443
95 % 46 60 650
90 % 46 60 689
70 % 46 61 712
50 % 47 63 749
40 % 47 63 786
30 % 47 63 788
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 126 169
95 % 95 126 234
90 % 95 126 244
70 % 95 126 274
50 % 95 127 307
40 % 95 136 303
30 % 95 136 319
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 120 184
95 % 92 120 254
90 % 92 120 262
70 % 92 120 299
50 % 92 131 293
40 % 92 131 316
30 % 92 131 332
Entity #8 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 63 395
95 % 48 63 585
90 % 48 63 616
70 % 48 63 659
50 % 49 74 570
40 % 49 74 606
30 % 49 74 615
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 125 173
95 % 94 126 235
90 % 94 126 245
70 % 94 126 277
50 % 94 126 314
40 % 94 126 336
30 % 94 137 314

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.