Sequence Similarity Clusters for the Entities in PDB 2B63

Entity #1 | Chains: R
31-MER rna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 116 221
95 % 90 116 309
90 % 90 116 325
70 % 91 119 339
50 % 91 121 390
40 % 91 121 417
30 % 91 124 411
Entity #11 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 137 178
95 % 95 137 235
90 % 95 137 249
70 % 96 151 255
50 % 101 159 246
40 % 101 159 267
30 % 101 159 275
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 117 217
95 % 91 117 304
90 % 91 117 320
70 % 91 117 357
50 % 92 120 398
40 % 92 122 412
30 % 92 122 418
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 133 180
95 % 93 133 245
90 % 93 133 257
70 % 93 133 288
50 % 94 136 313
40 % 94 136 328
30 % 94 136 340
Entity #2 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 115 222
95 % 91 115 310
90 % 91 115 326
70 % 92 118 342
50 % 92 129 341
40 % 92 129 370
30 % 92 129 378
Entity #3 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 116 220
95 % 91 117 300
90 % 91 117 315
70 % 92 122 324
50 % 92 131 336
40 % 97 139 317
30 % 97 142 326
Entity #4 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 112 226
95 % 89 112 314
90 % 89 112 333
70 % 89 112 371
50 % 89 114 419
40 % 89 114 456
30 % 89 114 453
Entity #5 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 61 548
95 % 47 61 760
90 % 47 61 788
70 % 47 62 816
50 % 49 67 741
40 % 49 67 777
30 % 49 67 767
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 138 174
95 % 96 138 231
90 % 96 138 243
70 % 97 141 274
50 % 97 143 294
40 % 97 152 295
30 % 97 152 307
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 132 183
95 % 93 132 249
90 % 93 132 261
70 % 93 132 289
50 % 94 147 286
40 % 94 147 304
30 % 94 147 318
Entity #8 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 64 488
95 % 49 64 683
90 % 49 64 711
70 % 49 64 763
50 % 51 79 562
40 % 51 79 606
30 % 51 79 604
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 137 177
95 % 95 138 232
90 % 95 138 244
70 % 95 138 279
50 % 96 141 301
40 % 96 141 315
30 % 96 153 304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.