Sequence Similarity Clusters for the Entities in PDB 2B5J

Entity #1 | Chains: A
Reverse transcriptase P66 SUBUNIT protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 107 254
95 % 208 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 208 258 119
70 % 208 258 135
50 % 209 259 163
40 % 210 260 173
30 % 210 260 192
Entity #2 | Chains: B
Reverse transcriptase P51 SUBUNIT protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 118 222
95 % 203 252 121 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 203 252 124
70 % 203 252 141
50 % 205 254 169
40 % 205 254 183
30 % 205 254 202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures