Sequence Similarity Clusters for the Entities in PDB 2B5J

Entity #1 | Chains: A
Reverse transcriptase P66 SUBUNIT protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 26 1210
95 % 206 255 91 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 206 255 95
70 % 206 255 112
50 % 207 256 151
40 % 208 257 164
30 % 208 257 176
Entity #2 | Chains: B
Reverse transcriptase P51 SUBUNIT protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 81 105 207
95 % 201 249 115 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 201 249 119
70 % 201 249 134
50 % 203 251 159
40 % 203 251 174
30 % 203 251 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures