Sequence Similarity Clusters for the Entities in PDB 2B5J

Entity #1 | Chains: A
Reverse transcriptase P66 SUBUNIT protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 107 268
95 % 228 278 109 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 228 278 115
70 % 228 278 131
50 % 229 279 156
40 % 230 280 165
30 % 230 280 184
Entity #2 | Chains: B
Reverse transcriptase P51 SUBUNIT protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 98 130 213
95 % 223 272 113 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 223 272 119
70 % 223 272 133
50 % 225 274 161
40 % 225 274 172
30 % 225 274 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures