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Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40867
95% 1 1 29785
90% 2 2 20112
70% 27 27 1155
50% 27 27 1218
40% 27 27 1253
30% 27 29 1153
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 28 921
95% 31 33 979
90% 31 33 1003
70% 31 33 1034
50% 31 33 1102
40% 31 33 1131
30% 31 33 1120
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20488
95% 2 2 17288
90% 353 365 4
70% 1257 1291 3
50% 2988 3070 1
40% 2989 3071 1
30% 3536 3629 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20159
95% 2 2 17040
90% 2 2 16605
70% 1444 1480 2
50% 2989 3070 1
40% 2990 3071 1
30% 3537 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.