Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53881
95 % 1 1 38965
90 % 2 2 26517
70 % 119 126 178
50 % 119 126 221
40 % 119 126 240
30 % 120 129 248
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 38 699
95 % 33 43 833
90 % 33 43 863
70 % 33 43 895
50 % 33 43 941
40 % 33 43 968
30 % 33 43 940
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27382
95 % 2 2 22832
90 % 667 697 3
70 % 2164 2280 1
50 % 4388 4619 1
40 % 4388 4619 1
30 % 5193 5440 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26933
95 % 2 2 22498
90 % 2 2 21840
70 % 2128 2238 2
50 % 4389 4619 1
40 % 4389 4619 1
30 % 5194 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.