Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47571
95 % 1 1 34441
90 % 2 2 23309
70 % 113 120 165
50 % 113 120 196
40 % 113 120 211
30 % 114 123 222
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 34 702
95 % 33 39 783
90 % 33 39 819
70 % 33 39 865
50 % 33 39 930
40 % 33 39 956
30 % 33 39 951
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23955
95 % 2 2 20061
90 % 452 476 4
70 % 1510 1568 3
50 % 3669 3813 1
40 % 3670 3814 1
30 % 4382 4537 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23576
95 % 2 2 19774
90 % 2 2 19219
70 % 1783 1850 1
50 % 3670 3813 1
40 % 3671 3814 1
30 % 4383 4537 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.