POP-OUT | CLOSE
 
Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41282
95% 1 1 30084
90% 2 2 20300
70% 28 28 1051
50% 28 28 1138
40% 28 28 1159
30% 28 30 1080
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 29 816
95% 32 34 893
90% 32 34 915
70% 32 34 954
50% 32 34 1033
40% 32 34 1066
30% 32 34 1043
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20693
95% 2 2 17451
90% 356 368 4
70% 1262 1297 3
50% 3006 3090 1
40% 3007 3091 1
30% 3558 3653 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20364
95% 2 2 17201
90% 2 2 16758
70% 1453 1490 2
50% 3007 3090 1
40% 3008 3091 1
30% 3559 3653 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.