Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52272
95 % 1 1 37774
90 % 2 2 25678
70 % 119 126 179
50 % 119 126 218
40 % 119 126 239
30 % 120 129 243
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 37 712
95 % 33 42 846
90 % 33 42 881
70 % 33 42 912
50 % 33 42 964
40 % 33 42 984
30 % 33 42 960
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26464
95 % 2 2 22057
90 % 637 665 3
70 % 1731 1803 2
50 % 4242 4435 1
40 % 4242 4435 1
30 % 5020 5225 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26029
95 % 2 2 21728
90 % 2 2 21110
70 % 2054 2145 1
50 % 4243 4435 1
40 % 4243 4435 1
30 % 5021 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.