POP-OUT | CLOSE

An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42300
95% 1 1 30784
90% 2 2 20754
70% 28 29 1075
50% 28 29 1140
40% 28 29 1161
30% 28 31 1061
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 835
95% 32 35 936
90% 32 35 956
70% 32 35 991
50% 32 35 1037
40% 32 35 1062
30% 32 35 1040
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21192
95% 2 2 17848
90% 363 377 5
70% 1293 1332 3
50% 3078 3170 1
40% 3079 3171 1
30% 3650 3753 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20854
95% 2 2 17592
90% 2 2 17131
70% 1487 1528 2
50% 3079 3170 1
40% 3080 3171 1
30% 3651 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.