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Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43417
95% 1 1 31580
90% 2 2 21245
70% 28 29 1103
50% 28 29 1160
40% 28 29 1186
30% 28 31 1081
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 857
95% 32 35 968
90% 32 35 988
70% 32 35 1018
50% 32 35 1059
40% 32 35 1086
30% 32 35 1063
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21715
95% 2 2 18242
90% 394 410 4
70% 1335 1377 3
50% 3176 3274 1
40% 3177 3275 1
30% 3754 3863 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21363
95% 2 2 17974
90% 2 2 17501
70% 1536 1580 2
50% 3177 3274 1
40% 3178 3275 1
30% 3755 3863 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.