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Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41017
95% 1 1 29882
90% 2 2 20186
70% 27 27 1157
50% 27 27 1221
40% 27 27 1256
30% 27 29 1158
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 28 925
95% 31 33 985
90% 31 33 1009
70% 31 33 1041
50% 31 33 1110
40% 31 33 1137
30% 31 33 1124
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20568
95% 2 2 17357
90% 354 366 4
70% 1258 1292 3
50% 2990 3072 1
40% 2991 3073 1
30% 3540 3633 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20239
95% 2 2 17107
90% 2 2 16669
70% 1445 1481 2
50% 2991 3072 1
40% 2992 3073 1
30% 3541 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.