Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54582
95 % 1 1 39475
90 % 2 2 26866
70 % 120 127 179
50 % 120 127 224
40 % 120 127 244
30 % 121 130 249
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 38 709
95 % 33 43 842 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 33 43 874
70 % 33 43 908
50 % 33 43 956
40 % 33 43 982
30 % 33 43 955
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27739
95 % 2 2 23125 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 690 720 3
70 % 2207 2327 1
50 % 4474 4713 1
40 % 4474 4713 1
30 % 5312 5567 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27287
95 % 2 2 22786
90 % 2 2 22111
70 % 2166 2280 2
50 % 4475 4713 1
40 % 4475 4713 1
30 % 5313 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.