Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53165
95 % 1 1 38451
90 % 2 2 26105
70 % 119 126 179
50 % 119 126 220
40 % 119 126 240
30 % 120 129 246
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 38 686
95 % 33 43 826 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 33 43 854
70 % 33 43 890
50 % 33 43 931
40 % 33 43 955
30 % 33 43 930
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26903
95 % 2 2 22430 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 655 685 3
70 % 1766 1845 2
50 % 4332 4545 1
40 % 4332 4545 1
30 % 5121 5350 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26463
95 % 2 2 22099 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.8
PDBFlex
90 % 2 2 21459
70 % 2100 2201 1
50 % 4333 4545 1
40 % 4333 4545 1
30 % 5122 5350 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.