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Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42589
95% 1 1 30965
90% 2 2 20885
70% 28 29 1085
50% 28 29 1145
40% 28 29 1168
30% 28 31 1066
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 843
95% 32 35 945
90% 32 35 964
70% 32 35 997
50% 32 35 1042
40% 32 35 1067
30% 32 35 1046
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21365
95% 2 2 17965
90% 365 379 5
70% 1298 1337 3
50% 3092 3184 1
40% 3093 3185 1
30% 3664 3767 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21024
95% 2 2 17705
90% 2 2 17237
70% 1494 1535 2
50% 3093 3184 1
40% 3094 3185 1
30% 3665 3767 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.