Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48476
95 % 1 1 35057
90 % 2 2 23741
70 % 114 121 166
50 % 114 121 198
40 % 114 121 214
30 % 115 124 223
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 34 727
95 % 33 39 841
90 % 33 39 875
70 % 33 39 917
50 % 33 39 961
40 % 33 39 980
30 % 33 39 974
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24442
95 % 2 2 20436
90 % 478 503 3
70 % 1556 1617 3
50 % 3778 3934 1
40 % 3779 3935 1
30 % 4496 4663 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24059
95 % 2 2 20148
90 % 2 2 19572
70 % 1836 1909 1
50 % 3779 3934 1
40 % 3780 3935 1
30 % 4497 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.