POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43525
95% 1 1 31650
90% 2 2 21297
70% 28 29 1106
50% 28 29 1163
40% 28 29 1190
30% 28 31 1086
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 861
95% 32 35 975
90% 32 35 994
70% 32 35 1023
50% 32 35 1063
40% 32 35 1090
30% 32 35 1067
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21774
95% 2 2 18283
90% 396 412 4
70% 1344 1386 3
50% 3193 3291 1
40% 3194 3292 1
30% 3771 3880 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21422
95% 2 2 18014
90% 2 2 17541
70% 1544 1588 2
50% 3194 3291 1
40% 3195 3292 1
30% 3772 3880 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.