POP-OUT | CLOSE

An Information Portal to 105212 Biological Macromolecular Structures

Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41659
95% 1 1 30356
90% 2 2 20464
70% 28 28 1083
50% 28 28 1150
40% 28 28 1171
30% 28 30 1091
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 29 851
95% 32 34 952
90% 32 34 971
70% 32 34 999
50% 32 34 1047
40% 32 34 1077
30% 32 34 1054
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20853
95% 2 2 17584
90% 357 370 5
70% 1267 1303 3
50% 3020 3106 1
40% 3021 3107 1
30% 3582 3679 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20522
95% 2 2 17332
90% 2 2 16885
70% 1460 1498 2
50% 3021 3106 1
40% 3022 3107 1
30% 3583 3679 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.