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Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
Sequence Clustering and Redundancy Reduction Results
2B4C
Sequence Clusters for the Sequence Entities in PDB 2B4C
Entity #1: Chains: G - envelope glycoprotein protein, length: 344 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43969
95% 1 1 31950
90% 2 2 21515
70% 28 29 1113
50% 28 29 1176
40% 28 29 1201
30% 28 31 1095
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 866
95% 32 35 984
90% 32 35 1005
70% 32 35 1036
50% 32 35 1081
40% 32 35 1102
30% 32 35 1077
Entity #3: Chains: L - anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22009
95% 2 2 18470
90% 402 418 4
70% 1369 1412 3
50% 3255 3355 1
40% 3256 3356 1
30% 3860 3971 1
Entity #4: Chains: H - anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21650
95% 2 2 18195
90% 2 2 17721
70% 1577 1622 2
50% 3256 3355 1
40% 3257 3356 1
30% 3861 3971 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.