Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56397
95 % 1 1 40734
90 % 2 2 27740
70 % 123 130 184
50 % 123 130 225
40 % 123 130 242
30 % 124 133 251
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 38 733
95 % 33 43 881 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 33 43 915
70 % 33 43 944
50 % 33 43 976
40 % 33 43 1006
30 % 33 43 990
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28742
95 % 2 2 23926 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 754 788 2
70 % 2338 2474 1
50 % 4740 5011 1
40 % 4740 5011 1
30 % 5652 5941 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 28278
95 % 2 2 23576
90 % 2 2 22851
70 % 2294 2424 2
50 % 4741 5011 1
40 % 4741 5011 1
30 % 5653 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures