Sequence Similarity Clusters for the Entities in PDB 2B4C

Entity #1 | Chains: G
envelope glycoprotein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48146
95 % 1 1 34835
90 % 2 2 23577
70 % 113 120 166
50 % 113 120 196
40 % 113 120 213
30 % 114 123 222
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 34 723
95 % 33 39 831
90 % 33 39 865
70 % 33 39 906
50 % 33 39 950
40 % 33 39 972
30 % 33 39 967
Entity #3 | Chains: L
anti-HIV-1 gp120 immunoglobulin X5 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24246
95 % 2 2 20294
90 % 475 500 4
70 % 1550 1609 3
50 % 3754 3902 1
40 % 3755 3903 1
30 % 4472 4631 1
Entity #4 | Chains: H
anti-HIV-1 gp120 immunoglobulin X5 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23865
95 % 2 2 20007
90 % 2 2 19435
70 % 1825 1894 1
50 % 3755 3902 1
40 % 3756 3903 1
30 % 4473 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.