Sequence Similarity Clusters for the Entities in PDB 2AKR

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 57 563
95 % 12 63 625 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 12 65 598
70 % 12 80 472
50 % 18 104 411
40 % 18 104 437
30 % 238 939 13
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 189 87
95 % 24 234 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 24 234 68
70 % 255 953 4
50 % 260 975 3
40 % 260 975 6
30 % 260 975 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures