Sequence Similarity Clusters for the Entities in PDB 2AKR

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 52 548
95 % 11 58 660 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 11 58 684
70 % 11 73 487
50 % 15 91 431
40 % 15 91 459
30 % 214 856 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 79 251
95 % 22 215 64 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 22 215 68
70 % 232 875 4
50 % 237 897 4
40 % 237 897 9
30 % 237 897 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.