Sequence Similarity Clusters for the Entities in PDB 2AKR

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 54 546
95 % 12 60 659 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.8
PDBFlex
90 % 12 60 686
70 % 12 75 522
50 % 18 97 430
40 % 18 97 452
30 % 225 899 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 90 219
95 % 24 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 24 228 65
70 % 243 916 4
50 % 248 938 3
40 % 248 938 7
30 % 248 938 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures