Sequence Similarity Clusters for the Entities in PDB 2AKR

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 57 588
95 % 12 63 643 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 12 65 611
70 % 12 80 490
50 % 18 104 424
40 % 18 104 453
30 % 247 964 12
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 189 89
95 % 24 234 67 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 24 234 73
70 % 264 979 4
50 % 269 1001 3
40 % 269 1001 6
30 % 269 1001 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures