Sequence Similarity Clusters for the Entities in PDB 2AKR

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 54 533
95 % 12 60 644 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 12 60 671
70 % 12 75 474
50 % 16 93 430
40 % 16 93 461
30 % 220 881 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 87 229
95 % 24 223 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 24 223 66
70 % 238 898 4
50 % 243 920 3
40 % 243 920 8
30 % 243 920 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.