Sequence Similarity Clusters for the Entities in PDB 2AKA

Entity #1 | Chains: A
myosin II heavy chain protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5932
95 % 3 41 1270 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.6
PDBFlex
90 % 3 41 1301
70 % 3 41 1329
50 % 3 41 1370
40 % 4 101 289
30 % 6 126 239
Entity #2 | Chains: L
LINKER protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B
Dynamin-1 protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56278
95 % 1 1 40266
90 % 1 1 38472
70 % 1 2 13020
50 % 1 2 11580
40 % 1 3 9021
30 % 1 3 7904

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.