Sequence Similarity Clusters for the Entities in PDB 2AKA

Entity #1 | Chains: A
myosin II heavy chain protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 6168
95 % 3 41 1315 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.6
PDBFlex
90 % 3 41 1343
70 % 3 41 1366
50 % 3 41 1413
40 % 4 101 304
30 % 6 134 221
Entity #2 | Chains: L
LINKER protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B
Dynamin-1 protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58167
95 % 1 1 41570
90 % 1 1 39669
70 % 1 2 13472
50 % 1 2 11972
40 % 1 3 9319
30 % 1 3 8163

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures