Sequence Similarity Clusters for the Entities in PDB 2AAI

Entity #1 | Chains: A
RICIN (A CHAIN) protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 849
95 % 41 52 900 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 42 54 860
70 % 42 54 895
50 % 42 54 945
40 % 139 170 299
30 % 179 212 238
Entity #2 | Chains: B
RICIN (B CHAIN) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29623
95 % 1 3 25888 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 3 24976
70 % 1 4 14515
50 % 11 26 2345
40 % 28 50 1178
30 % 28 50 1159

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2AAI 2 B RICIN (B CHAIN) 3988 3.2.2.22 | Details
2 1RZO 2 B, D Agglutinin B chain 3988
3 3RTI 2 B Ricin Ricin B chain 3988 3.2.2.22 | Details
4 3RTJ 3 B Ricin B chain 3988 3.2.2.22 | Details