Sequence Similarity Clusters for the Entities in PDB 2AAI

Entity #1 | Chains: A
RICIN (A CHAIN) protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 789
95 % 41 52 834 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 42 44 790
70 % 42 54 832
50 % 42 54 886
40 % 139 169 275
30 % 179 211 226
Entity #2 | Chains: B
RICIN (B CHAIN) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27789
95 % 1 3 24334 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 3 23530
70 % 1 4 13682
50 % 11 25 2274
40 % 28 47 1182
30 % 28 47 1166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4EB2 2 B Beta-galactoside-specific lectin 1 chain B SEE REMARK 999 3972
2 1M2T 2 B mistletoe lectin I B chain 3972
3 1ONK 2 B Galactose specific lectin I B chain 3972
4 2RG9 2 B Beta-galactoside-specific lectin 1 chain B 3972
5 1ABR 2 B ABRIN-A 3816
6 1SZ6 2 B BETA-GALACTOSIDE SPECIFIC LECTIN I B CHAIN 3972
7 3D7W 2 B Beta-galactoside-specific lectin 1 Beta-galactoside-specific lectin 1 chain B 3972 3.2.2.22 | Details
8 4JKX 2 B Beta-galactoside-specific lectin 1 B chain 3972 3.2.2.22 | Details
9 3O5W 2 B Beta-galactoside-specific lectin 1 chain B 3972 3.2.2.22 | Details
10 1PUU 2 B lectin I B chain 3972
11 2AAI 2 B RICIN (B CHAIN) 3988 3.2.2.22 | Details
12 2ZR1 2 B, D Agglutinin-1 chain B 3816
13 1RZO 2 B, D Agglutinin B chain 3988
14 1PUM 2 B lectin I B chain 3972
15 3RTI 2 B Ricin Ricin B chain 3988 3.2.2.22 | Details
16 1GGP 2 B PROTEIN (LECTIN 1 B CHAIN) 3677
17 2R9K 2 B Beta-galactoside-specific lectin 1 Beta-galactoside-specific lectin 1 chain B, UNP residues 302-564 3972
18 3RTJ 3 B Ricin B chain 3988 3.2.2.22 | Details
19 1OQL 2 B MISTLETOE LECTIN I 3972
20 1YF8 2 B Beta-galactoside-specific lectin 4 residues 1-255 3972 3.2.2.22 | Details
21 1CE7 2 B PROTEIN (RIBOSOME-INACTIVATING PROTEIN TYPE II) 3972
22 2MLL 2 B PROTEIN (RIBOSOME-INACTIVATING PROTEIN TYPE II) 3972
23 1TFM 2 B Himalayan mistletoe ribosome-inactivating protein 3972
24 2Q3N 2 B Agglutinin-1 B chain residues 281-547 3816
25 1PC8 2 B Himalayan mistletoe ribosome-inactivating protein 3972 3.2.2.22 | Details