Sequence Similarity Clusters for the Entities in PDB 1ZBI

Entity #1 | Chains: C
5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3' rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
ribonuclease H-related protein protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 24 1146
95 % 27 31 1195 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 27 31 1224
70 % 27 31 1257
50 % 27 31 1309
40 % 27 31 1327
30 % 27 31 1304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.