Sequence Similarity Clusters for the Entities in PDB 1ZBE

Entity #1 | Chains: 1
Coat protein VP1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41701
95 % 2 2 31727 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 30366
70 % 9 20 3216
50 % 9 22 2832
40 % 9 22 2787
30 % 9 22 2615
Entity #2 | Chains: 2
Coat protein VP2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41063
95 % 2 2 31369 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 30131
70 % 9 22 2872
50 % 9 22 2833
40 % 9 22 2788
30 % 41 195 167
Entity #3 | Chains: 3
Coat protein VP3 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 9176
95 % 2 4 9390
90 % 5 8 5894
70 % 9 22 2362
50 % 9 24 2158
40 % 11 36 334
30 % 43 210 149
Entity #4 | Chains: 4
Coat protein VP4 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 48497
95 % 8 18 3695 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 8 18 3746
70 % 8 18 3688
50 % 8 18 3578
40 % 8 18 3447
30 % 8 25 673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures