Sequence Similarity Clusters for the Entities in PDB 1ZBE

Entity #1 | Chains: 1
Coat protein VP1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34367
95 % 2 2 29592 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 28387
70 % 9 20 3286
50 % 9 22 2981
40 % 9 22 2981
30 % 9 27 429
Entity #2 | Chains: 2
Coat protein VP2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39765
95 % 2 2 33658 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 32185
70 % 9 22 3051
50 % 9 22 3072
40 % 9 22 2990
30 % 42 197 188
Entity #3 | Chains: 3
Coat protein VP3 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9008
95 % 2 4 9020 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 5 8 6255
70 % 9 22 2567
50 % 9 24 2366
40 % 12 36 405
30 % 44 210 168
Entity #4 | Chains: 4
Coat protein VP4 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5915
95 % 8 17 4098 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 8 18 4055
70 % 8 18 3962
50 % 8 18 3844
40 % 8 18 3662
30 % 8 18 3339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures