Sequence Similarity Clusters for the Entities in PDB 1ZBE

Entity #1 | Chains: 1
Coat protein VP1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39939
95 % 2 2 30418 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 29143
70 % 9 20 3083
50 % 9 22 2717
40 % 9 22 2673
30 % 9 22 2507
Entity #2 | Chains: 2
Coat protein VP2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39330
95 % 2 2 30075 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 28910
70 % 9 22 2750
50 % 9 22 2718
40 % 9 22 2674
30 % 42 192 164
Entity #3 | Chains: 3
Coat protein VP3 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39037
95 % 2 2 29904 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 5 6 11821
70 % 9 20 3078
50 % 9 22 2716
40 % 11 34 319
30 % 44 203 147
Entity #4 | Chains: 4
Coat protein VP4 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46573
95 % 8 18 3536 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 8 18 3588
70 % 8 18 3530
50 % 8 18 3441
40 % 8 18 3324
30 % 8 25 650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.