Sequence Similarity Clusters for the Entities in PDB 1ZBE

Entity #1 | Chains: 1
Coat protein VP1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33242
95 % 2 2 28625 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 27511
70 % 9 20 3158
50 % 9 22 2882
40 % 9 22 2880
30 % 9 27 414
Entity #2 | Chains: 2
Coat protein VP2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38333
95 % 2 2 32469 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 31103
70 % 9 22 2936
50 % 9 22 2967
40 % 9 22 2888
30 % 42 197 181
Entity #3 | Chains: 3
Coat protein VP3 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 8638
95 % 2 4 8664
90 % 5 8 6019
70 % 9 22 2481
50 % 9 24 2280
40 % 12 36 372
30 % 44 210 164
Entity #4 | Chains: 4
Coat protein VP4 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5665
95 % 8 17 3934 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 8 18 3896
70 % 8 18 3815
50 % 8 18 3715
40 % 8 18 3534
30 % 8 18 3242

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures