Sequence Similarity Clusters for the Entities in PDB 1ZBE

Entity #1 | Chains: 1
Coat protein VP1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41076
95 % 2 2 31266 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 29940
70 % 9 20 3167
50 % 9 22 2787
40 % 9 22 2742
30 % 9 22 2572
Entity #2 | Chains: 2
Coat protein VP2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40452
95 % 2 2 30914 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 29705
70 % 9 22 2832
50 % 9 22 2788
40 % 9 22 2743
30 % 41 194 165
Entity #3 | Chains: 3
Coat protein VP3 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 9034
95 % 2 4 9275
90 % 5 8 5811
70 % 9 22 2316
50 % 9 24 2115
40 % 11 36 319
30 % 43 209 148
Entity #4 | Chains: 4
Coat protein VP4 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47804
95 % 8 18 3632 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 8 18 3686
70 % 8 18 3635
50 % 8 18 3530
40 % 8 18 3409
30 % 8 25 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.