Sequence Similarity Clusters for the Entities in PDB 1ZBB

Entity #1 | Chains: I
DNA STRAND 1 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
DNA STRAND 2 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,a,e
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 71 205
95 % 160 179 71 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 165 184 76
70 % 166 185 92
50 % 169 189 120
40 % 169 189 141
30 % 169 189 154
Entity #4 | Chains: B,F,b,f
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 190 53
95 % 171 193 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 177 199 69
70 % 177 199 82
50 % 177 199 111
40 % 177 199 134
30 % 177 199 149
Entity #5 | Chains: C,G,c,g
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 91 168
95 % 147 175 72 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 155 183 75
70 % 161 189 84
50 % 172 200 107
40 % 172 200 130
30 % 172 200 144
Entity #6 | Chains: D,H,d,h
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 75 196
95 % 144 169 81 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 144 169 84
70 % 156 181 93
50 % 156 181 126
40 % 156 181 146
30 % 156 181 161

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures