Sequence Similarity Clusters for the Entities in PDB 1ZBB

Entity #1 | Chains: I
DNA STRAND 1 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
DNA STRAND 2 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,a,e
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 46 262
95 % 145 149 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.3
PDBFlex
90 % 148 152 78
70 % 149 153 96
50 % 152 156 132
40 % 152 156 146
30 % 152 156 162
Entity #4 | Chains: B,F,b,f
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 140 75
95 % 155 159 73 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 160 164 75
70 % 160 164 87
50 % 160 164 122
40 % 160 164 140
30 % 160 164 156
Entity #5 | Chains: C,G,c,g
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 74 165
95 % 133 139 86 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 141 147 80
70 % 147 153 88
50 % 157 163 119
40 % 157 163 138
30 % 157 163 152
Entity #6 | Chains: D,H,d,h
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 55 226
95 % 129 134 111 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 134 139 108
70 % 141 146 104
50 % 141 146 140
40 % 141 146 155
30 % 141 146 173

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.