Sequence Similarity Clusters for the Entities in PDB 1ZBB

Entity #1 | Chains: I
DNA STRAND 1 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
DNA STRAND 2 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,a,e
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 50 234
95 % 152 157 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 155 160 77
70 % 156 161 89
50 % 159 164 125
40 % 159 164 141
30 % 159 164 155
Entity #4 | Chains: B,F,b,f
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 143 148 56
95 % 162 167 70 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 167 172 72
70 % 167 172 85
50 % 167 172 117
40 % 167 172 138
30 % 167 172 147
Entity #5 | Chains: C,G,c,g
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 75 78 158
95 % 140 147 78 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.5
PDBFlex
90 % 148 155 78
70 % 154 161 87
50 % 164 171 111
40 % 164 171 134
30 % 164 171 143
Entity #6 | Chains: D,H,d,h
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 60 202
95 % 136 143 85 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 141 148 85
70 % 148 155 95
50 % 148 155 133
40 % 148 155 148
30 % 148 155 163

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.