Sequence Similarity Clusters for the Entities in PDB 1ZAA

Entity #1 | Chains: A
DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
PROTEIN (ZIF268) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 7521
95 % 11 16 3838 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 11 16 3883
70 % 11 18 3021
50 % 19 34 1450
40 % 22 181 266
30 % 23 203 239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4X9J 1 A Early growth response protein 1 UNP residues 335-423 9606
2 4R2A 1 A Early growth response protein 1 Zinc Finger 1-3 9606
3 1A1I 3 A RADR ZIF268 ZINC FINGER PEPTIDE 10090
4 1AAY 3 A PROTEIN (ZIF268 ZINC FINGER PEPTIDE) 10090
5 1A1H 3 A QGSR ZINC FINGER PEPTIDE 10090
6 1JK2 3 A ZIF268 ZINC FINGERS (Residues 333-421) 10090
7 4R2C 1 A Early growth response protein 1 Zinc Finger 1-3 9606
8 1A1K 3 A RADR ZIF268 VARIANT ZINC FINGER 10090
9 1JK1 3 A ZIF268 ZINC FINGERS (Residues 333-421) 10090
10 1A1G 3 A DSNR ZINC FINGER PEPTIDE 10090
11 1ZAA 3 C PROTEIN (ZIF268) 10090
12 1A1J 3 A PROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE) ZINC FINGER 10090
13 4R2D 1 A Early growth response protein 1 Zinc Finger 1-3 9606
14 1A1F 3 A THREE-FINGER ZIF268 PEPTIDE 10090
15 1A1L 3 A PROTEIN (ZIF268 ZINC FINGER PEPTIDE) ZINC FINGER 10090
16 1P47 3 A, B Early growth response protein 1 residues 333-419 10090