Sequence Similarity Clusters for the Entities in PDB 1Z5L

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d antigen protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 54 536
95 % 23 60 650 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.8
PDBFlex
90 % 23 60 677
70 % 23 75 484
50 % 36 97 422
40 % 36 97 451
30 % 535 896 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 90 217
95 % 113 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 113 228 65
70 % 561 912 4
50 % 573 934 3
40 % 573 934 7
30 % 573 934 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.