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An Information Portal to 110071 Biological Macromolecular Structures

Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D
Sequence Clustering and Redundancy Reduction Results
1Z5L
Sequence Clusters for the Sequence Entities in PDB 1Z5L
Entity #1: Chains: A,C - T-cell surface glycoprotein CD1d antigen protein, length: 285 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 52 357
95% 19 56 471
90% 19 56 494
70% 19 69 388
50% 26 83 322
40% 26 83 355
30% 417 712 13
Entity #2: Chains: B,D - Beta-2-microglobulin protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 72 224
95% 95 198 52
90% 95 198 58
70% 439 732 5
50% 448 750 5
40% 448 750 7
30% 448 750 11
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.