Sequence Similarity Clusters for the Entities in PDB 1Z5L

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d antigen protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 57 561
95 % 23 63 621 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 23 65 599
70 % 23 80 464
50 % 36 104 408
40 % 36 104 433
30 % 562 939 13
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 92 189 81
95 % 113 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 113 234 66
70 % 584 953 4
50 % 596 975 3
40 % 596 975 6
30 % 596 975 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures