Sequence Similarity Clusters for the Entities in PDB 1Z5L

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d antigen protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 57 498
95 % 23 63 612 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.8
PDBFlex
90 % 23 65 584
70 % 23 80 456
50 % 36 104 402
40 % 36 104 424
30 % 544 919 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 95 206
95 % 113 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 113 234 65
70 % 569 936 4
50 % 581 958 3
40 % 581 958 7
30 % 581 958 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures