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Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D
Sequence Clustering and Redundancy Reduction Results
1Z5L
Sequence Clusters for the Sequence Entities in PDB 1Z5L
Entity #1: Chains: A,C - T-cell surface glycoprotein CD1d antigen protein, length: 285 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 46 406
95% 18 49 552
90% 18 49 578
70% 18 61 421
50% 23 71 370
40% 23 71 388
30% 25 73 384
Entity #2: Chains: B,D - Beta-2-microglobulin protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 65 243
95% 92 186 24
90% 92 186 28
70% 404 678 5
50% 412 691 5
40% 412 691 6
30% 412 691 11
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.