Sequence Similarity Clusters for the Entities in PDB 1Z5L

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d antigen protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 54 551
95 % 23 60 662 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.8
PDBFlex
90 % 23 60 690
70 % 23 75 528
50 % 36 97 433
40 % 36 97 456
30 % 542 907 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 90 223
95 % 113 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 113 228 67
70 % 566 922 4
50 % 578 944 3
40 % 578 944 7
30 % 578 944 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures