Sequence Similarity Clusters for the Entities in PDB 1Z5L

Entity #1 | Chains: A,C
T-cell surface glycoprotein CD1d antigen protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 52 534
95 % 21 58 633 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 21 58 659
70 % 21 73 466
50 % 31 91 417
40 % 31 91 452
30 % 509 851 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 79 247
95 % 105 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 105 215 68
70 % 538 870 4
50 % 550 892 4
40 % 550 892 8
30 % 550 892 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.