Sequence Similarity Clusters for the Entities in PDB 1YYO

Entity #1 | Chains: C,D,E,F
5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3' rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Ribonuclease III protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28206
95 % 9 11 2750 Flexibility: Medium
Max RMSD: 14.3, Avg RMSD: 8.7
PDBFlex
90 % 9 11 2802
70 % 9 11 2786
50 % 9 11 2747
40 % 9 11 2696
30 % 12 14 2078

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures