Sequence Similarity Clusters for the Entities in PDB 1YYO

Entity #1 | Chains: C,D,E,F
5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3' rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Ribonuclease III protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27984
95 % 9 11 2725 Flexibility: Medium
Max RMSD: 14.3, Avg RMSD: 8.7
PDBFlex
90 % 9 11 2777
70 % 9 11 2753
50 % 9 11 2720
40 % 9 11 2673
30 % 12 14 2054

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures