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crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYM
Sequence Clusters for the Sequence Entities in PDB 1YYM
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 4370
95% 1 6 4970
90% 1 9 3126
70% 8 27 1155
50% 8 27 1218
40% 8 27 1253
30% 8 29 1153
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 17 1434
95% 8 20 1583
90% 120 365 4
70% 468 1291 3
50% 1136 3070 1
40% 1137 3071 1
30% 1257 3629 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 17 1431
95% 8 20 1579
90% 8 20 1627
70% 550 1480 2
50% 1137 3070 1
40% 1138 3071 1
30% 1258 3629 1
Entity #4: Chains: M,S - F23, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18299
95% 1 2 15833
90% 1 2 15439
70% 6 11 2401
50% 6 11 2433
40% 6 11 2423
30% 6 11 2273
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.