Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2628
95 % 1 9 3317
90 % 1 12 2472
70 % 44 122 167
50 % 44 122 198
40 % 44 122 214
30 % 44 125 226
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1252
95 % 8 23 1532
90 % 201 585 3
70 % 598 1648 3
50 % 1477 4012 1
40 % 1478 4014 1
30 % 1642 4750 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1250
95 % 8 23 1528
90 % 8 23 1564
70 % 716 1945 1
50 % 1478 4012 1
40 % 1479 4014 1
30 % 1643 4750 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22196
95 % 1 2 18977
90 % 1 2 18457
70 % 6 15 1659
50 % 6 15 1704
40 % 6 15 1723
30 % 6 15 1669

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.