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crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYM
Sequence Clusters for the Sequence Entities in PDB 1YYM
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 4249
95% 1 7 4853
90% 1 10 3107
70% 8 29 1090
50% 8 29 1149
40% 8 29 1176
30% 8 31 1074
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 18 1526
95% 8 21 1681
90% 128 389 4
70% 484 1349 3
50% 1170 3210 1
40% 1171 3211 1
30% 1297 3793 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 18 1525
95% 8 21 1679
90% 8 21 1727
70% 567 1548 2
50% 1171 3210 1
40% 1172 3211 1
30% 1298 3793 1
Entity #4: Chains: M,S - F23, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19210
95% 1 2 16537
90% 1 2 16110
70% 6 12 1698
50% 6 12 1742
40% 6 12 1770
30% 6 12 1698
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.