Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2837
95 % 1 9 3556
90 % 1 12 2710
70 % 46 126 179
50 % 46 126 218
40 % 46 126 239
30 % 46 129 243
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1203
95 % 8 24 1475
90 % 230 665 3
70 % 647 1803 2
50 % 1615 4435 1
40 % 1615 4435 1
30 % 1806 5225 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1201
95 % 8 24 1473
90 % 8 24 1500
70 % 778 2145 1
50 % 1616 4435 1
40 % 1616 4435 1
30 % 1807 5225 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23598
95 % 1 2 20138
90 % 1 2 19584
70 % 6 15 1796
50 % 6 15 1822
40 % 6 15 1830
30 % 6 15 1768

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.