POP-OUT | CLOSE
 
crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYM
Sequence Clusters for the Sequence Entities in PDB 1YYM
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 4428
95% 1 6 5033
90% 1 9 3214
70% 8 28 1051
50% 8 28 1138
40% 8 28 1159
30% 8 30 1080
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 17 1518
95% 8 20 1669
90% 122 368 4
70% 471 1297 3
50% 1142 3090 1
40% 1143 3091 1
30% 1265 3653 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 17 1515
95% 8 20 1665
90% 8 20 1711
70% 553 1490 2
50% 1143 3090 1
40% 1144 3091 1
30% 1266 3653 1
Entity #4: Chains: M,S - F23, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18485
95% 1 2 15987
90% 1 2 15584
70% 6 11 2477
50% 6 11 2473
40% 6 11 2452
30% 6 11 2297
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.