Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2774
95 % 1 9 3480
90 % 1 12 2641
70 % 45 125 172
50 % 45 125 211
40 % 45 125 234
30 % 45 128 239
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1166
95 % 8 24 1442
90 % 215 632 3
70 % 629 1752 2
50 % 1557 4272 1
40 % 1557 4272 1
30 % 1735 5038 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1164
95 % 8 24 1440
90 % 8 24 1466
70 % 750 2066 1
50 % 1558 4272 1
40 % 1558 4272 1
30 % 1736 5038 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23101
95 % 1 2 19722
90 % 1 2 19189
70 % 6 15 1758
50 % 6 15 1784
40 % 6 15 1796
30 % 6 15 1738

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.