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An Information Portal to 106082 Biological Macromolecular Structures

crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYM
Sequence Clusters for the Sequence Entities in PDB 1YYM
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 4156
95% 1 7 4748
90% 1 10 3049
70% 8 29 1075
50% 8 29 1140
40% 8 29 1161
30% 8 31 1061
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 18 1495
95% 8 21 1655
90% 123 377 5
70% 479 1332 3
50% 1158 3170 1
40% 1159 3171 1
30% 1285 3753 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 18 1494
95% 8 21 1653
90% 8 21 1698
70% 561 1528 2
50% 1159 3170 1
40% 1160 3171 1
30% 1286 3753 1
Entity #4: Chains: M,S - F23, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18922
95% 1 2 16337
90% 1 2 15918
70% 6 12 1673
50% 6 12 1714
40% 6 12 1746
30% 6 12 1677
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.