Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2451
95 % 1 9 3122
90 % 1 12 2303
70 % 8 31 1013
50 % 8 31 1063
40 % 8 31 1088
30 % 41 111 242
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1178
95 % 8 23 1437
90 % 149 461 4
70 % 551 1526 3
50 % 1354 3692 1
40 % 1355 3693 1
30 % 1499 4355 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1176
95 % 8 23 1432
90 % 8 23 1458
70 % 658 1790 1
50 % 1355 3692 1
40 % 1356 3693 1
30 % 1500 4355 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 20919
95 % 1 2 17976
90 % 1 2 17480
70 % 6 14 1648
50 % 6 14 1692
40 % 6 14 1709
30 % 6 14 1628

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.