Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2710
95 % 1 9 3399
90 % 1 12 2568
70 % 45 125 168
50 % 45 125 201
40 % 45 125 221
30 % 45 128 228
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1126
95 % 8 24 1406
90 % 212 613 3
70 % 614 1704 2
50 % 1517 4154 1
40 % 1517 4155 1
30 % 1683 4901 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1124
95 % 8 24 1404
90 % 8 24 1429
70 % 731 2010 1
50 % 1518 4154 1
40 % 1518 4155 1
30 % 1684 4901 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22613
95 % 1 2 19307
90 % 1 2 18783
70 % 6 15 1704
50 % 6 15 1745
40 % 6 15 1763
30 % 6 15 1702

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.