Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2744
95 % 1 9 3453
90 % 1 12 2605
70 % 45 125 171
50 % 45 125 204
40 % 45 125 226
30 % 45 128 232
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1145
95 % 8 24 1423
90 % 215 622 3
70 % 622 1726 2
50 % 1539 4210 1
40 % 1539 4211 1
30 % 1707 4962 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1143
95 % 8 24 1421
90 % 8 24 1447
70 % 741 2036 1
50 % 1540 4210 1
40 % 1540 4211 1
30 % 1708 4962 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22840
95 % 1 2 19508
90 % 1 2 18979
70 % 6 15 1727
50 % 6 15 1766
40 % 6 15 1781
30 % 6 15 1720

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.