Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2812
95 % 1 9 3529
90 % 1 12 2694
70 % 46 126 179
50 % 46 126 216
40 % 46 126 238
30 % 46 129 241
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1195
95 % 8 24 1473
90 % 220 644 3
70 % 638 1775 2
50 % 1595 4367 1
40 % 1595 4367 1
30 % 1781 5151 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 21 1193
95 % 8 24 1471
90 % 8 24 1494
70 % 768 2111 1
50 % 1596 4367 1
40 % 1596 4367 1
30 % 1782 5151 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23427
95 % 1 2 19987
90 % 1 2 19439
70 % 6 15 1788
50 % 6 15 1810
40 % 6 15 1821
30 % 6 15 1763

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.