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An Information Portal to 110790 Biological Macromolecular Structures

crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYM
Sequence Clusters for the Sequence Entities in PDB 1YYM
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 4408
95% 1 7 5019
90% 1 10 3202
70% 8 29 1119
50% 8 29 1187
40% 8 29 1214
30% 8 31 1105
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 18 1570
95% 8 21 1744
90% 137 425 4
70% 515 1434 3
50% 1251 3425 1
40% 1252 3426 1
30% 1382 4043 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 18 1568
95% 8 21 1741
90% 8 21 1786
70% 608 1656 1
50% 1252 3425 1
40% 1253 3426 1
30% 1383 4043 1
Entity #4: Chains: M,S - F23, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19822
95% 1 2 17055
90% 1 2 16613
70% 6 14 1561
50% 6 14 1609
40% 6 14 1639
30% 6 14 1566
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.