Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2528
95 % 1 9 3218
90 % 1 12 2377
70 % 44 120 165
50 % 44 120 196
40 % 44 120 212
30 % 44 123 222
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1205
95 % 8 23 1474
90 % 157 482 4
70 % 575 1583 3
50 % 1413 3846 1
40 % 1414 3847 1
30 % 1575 4574 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1203
95 % 8 23 1470
90 % 8 23 1499
70 % 687 1866 1
50 % 1414 3846 1
40 % 1415 3847 1
30 % 1576 4574 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21535
95 % 1 2 18464
90 % 1 2 17967
70 % 6 14 1698
50 % 6 14 1737
40 % 6 14 1756
30 % 6 14 1683

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.