Sequence Similarity Clusters for the Entities in PDB 1YYM

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 2579
95 % 1 9 3274
90 % 1 12 2426
70 % 44 121 166
50 % 44 121 198
40 % 44 121 214
30 % 44 124 223
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1223
95 % 8 23 1496
90 % 164 505 3
70 % 584 1620 3
50 % 1438 3940 1
40 % 1439 3941 1
30 % 1600 4669 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 1221
95 % 8 23 1492
90 % 8 23 1523
70 % 699 1912 1
50 % 1439 3940 1
40 % 1440 3941 1
30 % 1601 4669 1
Entity #4 | Chains: M,S
F23, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21879
95 % 1 2 18727
90 % 1 2 18216
70 % 6 15 1622
50 % 6 15 1675
40 % 6 15 1699
30 % 6 15 1649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.