POP-OUT | CLOSE
 
crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 4347
95% 4 6 4944
90% 5 9 3115
70% 18 27 1154
50% 18 27 1216
40% 18 27 1250
30% 18 29 1149
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 17 1429
95% 16 20 1577
90% 218 360 4
70% 811 1274 3
50% 1938 3031 1
40% 1939 3032 1
30% 2232 3590 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 17 1426
95% 16 20 1573
90% 16 20 1621
70% 936 1461 2
50% 1939 3031 1
40% 1940 3032 1
30% 2233 3590 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18209
95% 2 2 15758
90% 2 2 15368
70% 9 10 2614
50% 9 10 2638
40% 9 10 2604
30% 9 10 2427
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.