Sequence Similarity Clusters for the Entities in PDB 1YYL

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2715
95 % 4 9 3407
90 % 5 12 2574
70 % 74 125 168
50 % 74 125 201
40 % 74 125 221
30 % 74 128 228
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 21 1129
95 % 16 24 1409
90 % 382 618 3
70 % 1075 1710 2
50 % 2610 4166 1
40 % 2610 4167 1
30 % 3013 4915 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 21 1127
95 % 16 24 1407
90 % 16 24 1433
70 % 1263 2016 1
50 % 2611 4166 1
40 % 2611 4167 1
30 % 3014 4915 1
Entity #4 | Chains: M,S
CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22671
95 % 2 2 19358
90 % 2 2 18833
70 % 9 15 1706
50 % 9 15 1747
40 % 9 15 1766
30 % 9 15 1704

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.