POP-OUT | CLOSE
 
crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 4406
95% 4 6 5010
90% 5 9 3150
70% 18 28 1004
50% 18 28 1078
40% 18 28 1101
30% 18 30 1025
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 17 1448
95% 16 20 1595
90% 221 366 5
70% 825 1293 3
50% 1973 3082 1
40% 1974 3083 1
30% 2269 3645 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 17 1445
95% 16 20 1591
90% 16 20 1636
70% 953 1486 2
50% 1974 3082 1
40% 1975 3083 1
30% 2270 3645 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18440
95% 2 2 15958
90% 2 2 15556
70% 9 11 2419
50% 9 11 2449
40% 9 11 2436
30% 9 11 2283
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.