Sequence Similarity Clusters for the Entities in PDB 1YYL

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2637
95 % 4 9 3326
90 % 5 12 2476
70 % 72 122 167
50 % 72 122 198
40 % 72 122 215
30 % 72 125 226
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1255
95 % 16 23 1538
90 % 365 590 3
70 % 1036 1653 3
50 % 2518 4026 1
40 % 2519 4028 1
30 % 2918 4764 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1253
95 % 16 23 1534
90 % 16 23 1570
70 % 1221 1952 1
50 % 2519 4026 1
40 % 2520 4028 1
30 % 2919 4764 1
Entity #4 | Chains: M,S
CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22245
95 % 2 2 19017
90 % 2 2 18493
70 % 9 15 1663
50 % 9 15 1708
40 % 9 15 1729
30 % 9 15 1675

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.