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An Information Portal to 110071 Biological Macromolecular Structures

crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4369
95% 4 7 4983
90% 5 10 3177
70% 18 29 1113
50% 18 29 1176
40% 18 29 1201
30% 18 31 1095
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1557
95% 16 21 1724
90% 253 418 4
70% 889 1412 3
50% 2126 3355 1
40% 2127 3356 1
30% 2443 3971 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1555
95% 16 21 1722
90% 16 21 1768
70% 1029 1622 2
50% 2127 3355 1
40% 2128 3356 1
30% 2444 3971 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 19634
95% 2 2 16882
90% 2 2 16456
70% 9 12 1741
50% 9 12 1779
40% 9 12 1806
30% 9 12 1723
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.