Sequence Similarity Clusters for the Entities in PDB 1YYL

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2528
95 % 4 9 3218
90 % 5 12 2377
70 % 72 120 165
50 % 72 120 196
40 % 72 120 212
30 % 72 123 222
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1205
95 % 16 23 1474
90 % 286 482 4
70 % 994 1583 3
50 % 2416 3846 1
40 % 2417 3847 1
30 % 2810 4574 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1203
95 % 16 23 1470
90 % 16 23 1499
70 % 1173 1866 1
50 % 2417 3846 1
40 % 2418 3847 1
30 % 2811 4574 1
Entity #4 | Chains: M,S
CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21535
95 % 2 2 18464
90 % 2 2 17967
70 % 9 14 1698
50 % 9 14 1737
40 % 9 14 1756
30 % 9 14 1683

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.