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An Information Portal to 107049 Biological Macromolecular Structures

crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4203
95% 4 7 4796
90% 5 10 3088
70% 18 29 1085
50% 18 29 1145
40% 18 29 1170
30% 18 31 1068
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1514
95% 16 21 1668
90% 228 380 5
70% 852 1339 3
50% 2033 3188 1
40% 2034 3189 1
30% 2338 3771 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1513
95% 16 21 1666
90% 16 21 1713
70% 981 1537 2
50% 2034 3188 1
40% 2035 3189 1
30% 2339 3771 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 19119
95% 2 2 16473
90% 2 2 16047
70% 9 12 1681
50% 9 12 1726
40% 9 12 1758
30% 9 12 1685
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.