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An Information Portal to 108124 Biological Macromolecular Structures

crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4276
95% 4 7 4875
90% 5 10 3123
70% 18 29 1096
50% 18 29 1156
40% 18 29 1181
30% 18 31 1076
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1535
95% 16 21 1689
90% 234 389 5
70% 865 1358 3
50% 2069 3236 1
40% 2070 3237 1
30% 2374 3821 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1534
95% 16 21 1687
90% 16 21 1735
70% 999 1561 2
50% 2070 3236 1
40% 2071 3237 1
30% 2375 3821 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 19287
95% 2 2 16601
90% 2 2 16174
70% 9 12 1707
50% 9 12 1751
40% 9 12 1777
30% 9 12 1703
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.