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An Information Portal to 110790 Biological Macromolecular Structures

crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4408
95% 4 7 5019
90% 5 10 3202
70% 18 29 1119
50% 18 29 1187
40% 18 29 1214
30% 18 31 1105
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1570
95% 16 21 1744
90% 257 425 4
70% 904 1434 3
50% 2173 3425 1
40% 2174 3426 1
30% 2492 4043 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1568
95% 16 21 1741
90% 16 21 1786
70% 1052 1656 1
50% 2174 3425 1
40% 2175 3426 1
30% 2493 4043 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 19822
95% 2 2 17055
90% 2 2 16613
70% 9 14 1561
50% 9 14 1609
40% 9 14 1639
30% 9 14 1566
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.