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An Information Portal to 111558 Biological Macromolecular Structures

crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 9 2357
95% 4 9 2997
90% 5 12 2207
70% 18 31 973
50% 18 31 1021
40% 18 31 1044
30% 18 33 979
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 20 1125
95% 16 23 1374
90% 259 431 4
70% 908 1445 3
50% 2191 3457 1
40% 2192 3458 1
30% 2512 4083 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 20 1123
95% 16 23 1369
90% 16 23 1393
70% 1061 1672 1
50% 2192 3457 1
40% 2193 3458 1
30% 2513 4083 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20004
95% 2 2 17225
90% 2 2 16764
70% 9 14 1570
50% 9 14 1616
40% 9 14 1645
30% 9 14 1571
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.