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An Information Portal to 107620 Biological Macromolecular Structures

crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
Sequence Clustering and Redundancy Reduction Results
1YYL
Sequence Clusters for the Sequence Entities in PDB 1YYL
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4249
95% 4 7 4853
90% 5 10 3107
70% 18 29 1090
50% 18 29 1149
40% 18 29 1176
30% 18 31 1074
Entity #2: Chains: L,Q - antibody 17b light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1526
95% 16 21 1681
90% 234 389 4
70% 858 1349 3
50% 2047 3210 1
40% 2048 3211 1
30% 2352 3793 1
Entity #3: Chains: H,R - antibody 17b heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 18 1525
95% 16 21 1679
90% 16 21 1727
70% 988 1548 2
50% 2048 3210 1
40% 2049 3211 1
30% 2353 3793 1
Entity #4: Chains: M,S - CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 19210
95% 2 2 16537
90% 2 2 16110
70% 9 12 1698
50% 9 12 1742
40% 9 12 1770
30% 9 12 1698
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.