Sequence Similarity Clusters for the Entities in PDB 1YYL

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2609
95 % 4 9 3289
90 % 5 12 2452
70 % 72 121 167
50 % 72 121 199
40 % 72 121 217
30 % 72 124 223
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1241
95 % 16 23 1515
90 % 303 518 3
70 % 1026 1639 3
50 % 2491 3985 1
40 % 2492 3986 1
30 % 2887 4715 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1239
95 % 16 23 1511
90 % 16 23 1543
70 % 1208 1932 1
50 % 2492 3985 1
40 % 2493 3986 1
30 % 2888 4715 1
Entity #4 | Chains: M,S
CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22026
95 % 2 2 18848
90 % 2 2 18331
70 % 9 15 1645
50 % 9 15 1688
40 % 9 15 1707
30 % 9 15 1659

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.