Sequence Similarity Clusters for the Entities in PDB 1YYL

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2751
95 % 4 9 3461
90 % 5 12 2614
70 % 74 125 171
50 % 74 125 206
40 % 74 125 230
30 % 74 128 232
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 21 1146
95 % 16 24 1426
90 % 385 624 3
70 % 1084 1729 2
50 % 2638 4220 1
40 % 2638 4221 1
30 % 3044 4972 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 21 1144
95 % 16 24 1424
90 % 16 24 1450
70 % 1275 2041 1
50 % 2639 4220 1
40 % 2639 4221 1
30 % 3045 4972 1
Entity #4 | Chains: M,S
CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22900
95 % 2 2 19554
90 % 2 2 19022
70 % 9 15 1728
50 % 9 15 1768
40 % 9 15 1781
30 % 9 15 1724

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.