Sequence Similarity Clusters for the Entities in PDB 1YYL

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2573
95 % 4 9 3265
90 % 5 12 2422
70 % 72 121 166
50 % 72 121 198
40 % 72 121 214
30 % 72 124 223
Entity #2 | Chains: L,Q
antibody 17b light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1221
95 % 16 23 1491
90 % 298 503 3
70 % 1015 1617 3
50 % 2465 3934 1
40 % 2466 3935 1
30 % 2860 4663 1
Entity #3 | Chains: H,R
antibody 17b heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 1219
95 % 16 23 1487
90 % 16 23 1518
70 % 1197 1909 1
50 % 2466 3934 1
40 % 2467 3935 1
30 % 2861 4663 1
Entity #4 | Chains: M,S
CD4M33, scorpion-toxin mimic of CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21828
95 % 2 2 18692
90 % 2 2 18182
70 % 9 15 1619
50 % 9 15 1673
40 % 9 15 1697
30 % 9 15 1647

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.