Sequence Similarity Clusters for the Entities in PDB 1YTI

Entity #1 | Chains: A
SIV PROTEASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29542
95 % 3 7 8038 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 3 7 7988
70 % 16 26 1076
50 % 609 694 5
40 % 619 704 9
30 % 621 706 14
Entity #2 | Chains: I
PEPTIDE PRODUCT protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.