Sequence Similarity Clusters for the Entities in PDB 1YTB

Entity #1 | Chains: C,D
DNA (29MER) dna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (TATA BINDING PROTEIN (TBP)) protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 3913
95 % 1 9 4687 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 1 9 4706
70 % 2 33 938
50 % 2 37 879
40 % 2 41 818
30 % 2 42 760

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.