Sequence Similarity Clusters for the Entities in PDB 1YQV

Entity #1 | Chains: L
HyHEL-5 Antibody Light Chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28887
95 % 2 22 1678 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 5 148 144
70 % 186 2479 1
50 % 387 5021 1
40 % 387 5021 1
30 % 439 5951 1
Entity #2 | Chains: H
HyHEL-5 Antibody Heavy Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62649
95 % 1 3 23955 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 13 3321
70 % 188 2429 2
50 % 388 5021 1
40 % 388 5021 1
30 % 440 5951 1
Entity #3 | Chains: Y
Hen Egg White Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 306 668 3
95 % 330 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 336 738 5
70 % 416 961 7
50 % 416 969 8
40 % 419 1003 11
30 % 419 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures