Sequence Similarity Clusters for the Entities in PDB 1YQV

Entity #1 | Chains: L
HyHEL-5 Antibody Light Chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27655
95 % 2 22 1602 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 5 145 141
70 % 160 2287 1
50 % 334 4633 1
40 % 334 4633 1
30 % 361 5461 1
Entity #2 | Chains: H
HyHEL-5 Antibody Heavy Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60125
95 % 1 3 22984 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 13 3156
70 % 163 2244 2
50 % 335 4633 1
40 % 335 4633 1
30 % 362 5461 1
Entity #3 | Chains: Y
Hen Egg White Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 299 655 3
95 % 323 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 329 725 5
70 % 405 942 7
50 % 405 950 8
40 % 408 984 11
30 % 408 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.