Sequence Similarity Clusters for the Entities in PDB 1YQV

Entity #1 | Chains: L
HyHEL-5 Antibody Light Chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28487
95 % 2 22 1658 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 5 148 140
70 % 178 2426 1
50 % 370 4913 1
40 % 370 4913 1
30 % 398 5780 1
Entity #2 | Chains: H
HyHEL-5 Antibody Heavy Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61829
95 % 1 3 23629 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 13 3279
70 % 180 2376 2
50 % 371 4913 1
40 % 371 4913 1
30 % 399 5780 1
Entity #3 | Chains: Y
Hen Egg White Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 306 666 3
95 % 330 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 336 736 5
70 % 415 956 7
50 % 415 964 8
40 % 418 998 11
30 % 418 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures