Sequence Similarity Clusters for the Entities in PDB 1YPJ

Entity #1 | Chains: L
Thrombin light chain protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 335 45
95 % 114 336 60
90 % 114 336 65
70 % 114 338 76
50 % 114 338 101
40 % 114 338 125
30 % 114 338 137
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 290 55
95 % 118 374 35
90 % 118 381 38
70 % 118 405 44
50 % 118 405 78
40 % 746 1684 4
30 % 789 1833 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.