Sequence Similarity Clusters for the Entities in PDB 1YPJ

Entity #1 | Chains: L
Thrombin light chain protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 335 45
95 % 113 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 113 336 66
70 % 113 338 78
50 % 113 338 105
40 % 113 338 128
30 % 113 338 137
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 290 57
95 % 117 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 117 381 39
70 % 117 405 45
50 % 117 405 81
40 % 751 1696 4
30 % 794 1846 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.