Sequence Similarity Clusters for the Entities in PDB 1YPJ

Entity #1 | Chains: L
Thrombin light chain protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 321 40
95 % 105 322 55
90 % 105 322 59
70 % 105 324 68
50 % 105 324 92
40 % 105 324 114
30 % 105 324 128
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 277 50
95 % 109 360 19
90 % 109 367 21
70 % 109 391 26
50 % 109 391 45
40 % 679 1567 3
30 % 722 1707 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.