Sequence Similarity Clusters for the Entities in PDB 1YPJ

Entity #1 | Chains: L
Thrombin light chain protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 323 39
95 % 107 324 55
90 % 107 324 59
70 % 107 326 67
50 % 107 326 92
40 % 107 326 116
30 % 107 326 130
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 278 50
95 % 111 362 19
90 % 111 369 22
70 % 111 393 26
50 % 111 393 47
40 % 687 1579 3
30 % 730 1720 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.