Sequence Similarity Clusters for the Entities in PDB 1YPG

Entity #1 | Chains: L
Thrombin light chain protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 322 39
95 % 100 323 55
90 % 100 323 59
70 % 100 325 67
50 % 100 325 91
40 % 100 325 114
30 % 100 325 128
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 278 50
95 % 104 361 19
90 % 104 368 22
70 % 104 392 26
50 % 104 392 45
40 % 658 1575 3
30 % 697 1716 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.