Sequence Similarity Clusters for the Entities in PDB 1YPG

Entity #1 | Chains: L
Thrombin light chain protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 338 45
95 % 110 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 110 339 67
70 % 110 341 78
50 % 110 341 107
40 % 110 341 131
30 % 110 341 138
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 290 59
95 % 114 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 114 384 40
70 % 114 408 46
50 % 114 408 84
40 % 742 1721 4
30 % 781 1871 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures