Sequence Similarity Clusters for the Entities in PDB 1YPE

Entity #1 | Chains: L
Thrombin light chain protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 102 335 45
95 % 102 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 102 336 65
70 % 102 338 76
50 % 102 338 101
40 % 102 338 125
30 % 102 338 136
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 290 55
95 % 106 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 106 381 38
70 % 106 405 43
50 % 106 405 78
40 % 678 1682 4
30 % 711 1831 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.