Sequence Similarity Clusters for the Entities in PDB 1YM4

Entity #1 | Chains: A,B,C
Beta-secretase 1 protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 276 25
95 % 304 364 15 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 304 364 16
70 % 304 364 24
50 % 314 376 41
40 % 314 376 56
30 % 314 376 73
Entity #2 | Chains: X,Y,Z
NVP-AMK640 INHIBITOR protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures