Sequence Similarity Clusters for the Entities in PDB 1YM2

Entity #1 | Chains: A,B,C
Beta-secretase 1 protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 163 280 21
95 % 221 363 15 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 221 363 16
70 % 221 363 24
50 % 226 375 41
40 % 226 375 54
30 % 226 375 72
Entity #2 | Chains: X,Y,Z
NVP-AUR200 INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures