Sequence Similarity Clusters for the Entities in PDB 1YM2

Entity #1 | Chains: A,B,C
Beta-secretase 1 protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 162 278 20
95 % 220 361 14 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 220 361 15
70 % 220 361 24
50 % 225 373 38
40 % 225 373 50
30 % 225 373 67
Entity #2 | Chains: X,Y,Z
NVP-AUR200 INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.