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An Information Portal to 105025 Biological Macromolecular Structures

Crystal structure of 70S ribosome with thrS operator and tRNAs. 30S subunit. The coordinates for the 50S subunit are in the pdb entry 1YL3
Sequence Clustering and Redundancy Reduction Results
1YL4
Sequence Clusters for the Sequence Entities in PDB 1YL4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: K - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 268 21
95% 247 268 40
90% 251 272 39
70% 251 272 50
50% 323 384 35
40% 324 386 47
30% 369 459 43
Entity #11: Chains: L - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 113 150
95% 249 268 44
90% 249 268 46
70% 249 268 56
50% 319 378 40
40% 319 378 54
30% 363 450 50
Entity #12: Chains: M - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 265 27
95% 249 267 47
90% 249 267 49
70% 249 267 59
50% 325 384 34
40% 325 384 46
30% 325 389 65
Entity #13: Chains: N - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 268 25
95% 249 268 43
90% 249 268 45
70% 249 268 55
50% 319 378 41
40% 365 454 34
30% 365 454 44
Entity #14: Chains: O - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 237 35
95% 249 275 35
90% 249 275 37
70% 319 390 24
50% 319 390 33
40% 319 390 45
30% 319 390 68
Entity #15: Chains: P - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 269 22
95% 249 269 41
90% 249 269 43
70% 249 269 53
50% 319 380 38
40% 319 380 51
30% 363 452 47
Entity #16: Chains: Q - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 267 26
95% 249 267 48
90% 249 267 50
70% 249 267 60
50% 249 267 93
40% 249 267 119
30% 249 267 141
Entity #17: Chains: R - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 271 20
95% 254 276 32
90% 254 276 34
70% 254 276 47
50% 327 391 32
40% 327 391 43
30% 327 391 67
Entity #18: Chains: S - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 263 28
95% 249 268 45
90% 249 268 47
70% 249 268 57
50% 249 268 91
40% 249 268 117
30% 319 378 76
Entity #19: Chains: T - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 92 221
95% 244 262 49
90% 248 266 51
70% 248 266 61
50% 248 266 94
40% 248 266 120
30% 248 266 142
Entity #2: Chains: B,C - tRNA Phe (unmodified bases) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: U - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 49 486
95% 222 232 61
90% 222 232 64
70% 222 232 78
50% 222 232 115
40% 222 232 139
30% 222 232 160
Entity #21: Chains: V - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 234 37
95% 222 234 59
90% 222 234 63
70% 222 234 77
50% 321 381 37
40% 321 381 49
30% 321 381 72
Entity #22: Chains: W - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 61 363
95% 249 267 46
90% 249 267 48
70% 249 267 58
50% 249 267 92
40% 249 267 118
30% 249 267 140
Entity #23: Chains: X - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 249 34
95% 238 249 53
90% 238 249 55
70% 238 249 67
50% 238 249 104
40% 238 249 132
30% 238 249 151
Entity #3: Chains: 1 - thrS mRNA operator rna, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: E - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 268 23
95% 249 269 38
90% 249 269 41
70% 249 269 51
50% 249 269 90
40% 319 378 53
30% 319 378 75
Entity #5: Chains: F - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 230 38
95% 220 230 63
90% 220 230 66
70% 220 230 80
50% 264 293 73
40% 264 293 99
30% 264 293 119
Entity #6: Chains: G - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 261 29
95% 250 269 39
90% 250 269 42
70% 250 269 52
50% 320 378 39
40% 320 379 52
30% 320 379 74
Entity #7: Chains: H - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 268 24
95% 250 268 42
90% 250 268 44
70% 250 268 54
50% 321 382 36
40% 321 382 48
30% 321 384 71
Entity #8: Chains: I - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 273 18
95% 258 279 29
90% 258 279 30
70% 258 279 44
50% 258 279 84
40% 258 279 106
30% 286 328 94
Entity #9: Chains: J - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 272 19
95% 251 273 36
90% 251 273 38
70% 251 273 49
50% 280 323 56
40% 280 324 73
30% 280 324 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.