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Crystal structure of 70S ribosome with thrS operator and tRNAs. 30S subunit. The coordinates for the 50S subunit are in the pdb entry 1YL3
Sequence Clustering and Redundancy Reduction Results
1YL4
Sequence Clusters for the Sequence Entities in PDB 1YL4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: K - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 255 23
95% 234 255 41
90% 238 259 40
70% 238 259 52
50% 308 369 36
40% 309 371 49
30% 320 408 50
Entity #11: Chains: L - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 113 134
95% 236 255 45
90% 236 255 48
70% 236 255 60
50% 304 363 41
40% 304 363 56
30% 314 399 59
Entity #12: Chains: M - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 252 29
95% 236 254 48
90% 236 254 51
70% 236 254 63
50% 310 369 34
40% 310 369 48
30% 310 374 67
Entity #13: Chains: N - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 255 27
95% 236 255 44
90% 236 255 47
70% 236 255 59
50% 304 363 42
40% 316 403 39
30% 316 403 53
Entity #14: Chains: O - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 224 37
95% 236 262 36
90% 236 262 38
70% 304 375 24
50% 304 375 33
40% 304 375 47
30% 304 375 71
Entity #15: Chains: P - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 256 24
95% 236 256 42
90% 236 256 45
70% 236 256 57
50% 304 365 39
40% 304 365 53
30% 314 401 57
Entity #16: Chains: Q - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 254 28
95% 236 254 49
90% 236 254 52
70% 236 254 64
50% 236 254 99
40% 236 254 124
30% 236 254 144
Entity #17: Chains: R - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 258 21
95% 241 263 35
90% 241 263 37
70% 241 263 48
50% 312 376 32
40% 312 376 45
30% 312 376 69
Entity #18: Chains: S - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 250 31
95% 236 255 46
90% 236 255 49
70% 236 255 61
50% 236 255 97
40% 236 255 122
30% 304 363 78
Entity #19: Chains: T - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 92 219
95% 231 249 51
90% 235 253 53
70% 235 253 65
50% 235 253 100
40% 235 253 126
30% 235 253 146
Entity #2: Chains: B,C - tRNA Phe (unmodified bases) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: U - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 49 463
95% 211 221 64
90% 211 221 68
70% 211 221 81
50% 211 221 116
40% 211 221 144
30% 211 221 166
Entity #21: Chains: V - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 223 38
95% 211 223 63
90% 211 223 67
70% 211 223 80
50% 306 366 38
40% 306 366 52
30% 306 366 75
Entity #22: Chains: W - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 61 359
95% 236 254 47
90% 236 254 50
70% 236 254 62
50% 236 254 98
40% 236 254 123
30% 236 254 143
Entity #23: Chains: X - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 238 34
95% 227 238 55
90% 227 238 59
70% 227 238 71
50% 227 238 110
40% 227 238 133
30% 227 238 153
Entity #3: Chains: 1 - thrS mRNA operator rna, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: E - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 255 25
95% 236 256 39
90% 236 256 43
70% 236 256 55
50% 236 256 96
40% 304 363 55
30% 304 363 77
Entity #5: Chains: F - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 209 219 39
95% 209 219 66
90% 209 219 70
70% 209 219 83
50% 253 282 81
40% 253 282 101
30% 253 282 123
Entity #6: Chains: G - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 248 32
95% 237 256 40
90% 237 256 44
70% 237 256 56
50% 305 363 40
40% 305 364 54
30% 305 364 76
Entity #7: Chains: H - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 255 26
95% 237 255 43
90% 237 255 46
70% 237 255 58
50% 306 367 37
40% 306 367 51
30% 306 369 72
Entity #8: Chains: I - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 260 18
95% 245 266 34
90% 245 266 36
70% 245 266 47
50% 245 266 88
40% 245 266 112
30% 271 313 95
Entity #9: Chains: J - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 259 20
95% 238 260 37
90% 238 260 39
70% 238 260 51
50% 265 308 57
40% 265 309 74
30% 265 309 97
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.