Sequence Similarity Clusters for the Entities in PDB 1YHM

Entity #1 | Chains: A,B,C
farnesyl pyrophosphate synthase protein, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 14 3398
95 % 10 14 3718 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 10 14 3785
70 % 21 29 1169
50 % 24 32 1042
40 % 99 123 379
30 % 106 136 268

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures