Sequence Similarity Clusters for the Entities in PDB 1YCS

Entity #1 | Chains: A
P53 protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 24 495
95 % 69 82 157 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 70 83 166
70 % 76 91 177
50 % 77 106 160
40 % 77 106 179
30 % 77 106 191
Entity #2 | Chains: B
53BP2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58867
95 % 1 2 10436 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 1 2 10308
70 % 1 2 9801
50 % 2 3 7901
40 % 2 3 7262
30 % 2 3 6406

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.