Sequence Similarity Clusters for the Entities in PDB 1YCS

Entity #1 | Chains: A
P53 protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 494
95 % 79 92 152 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 80 93 160
70 % 86 101 174
50 % 87 122 150
40 % 87 122 164
30 % 87 122 185
Entity #2 | Chains: B
53BP2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56008
95 % 1 2 11147 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 1 2 10998
70 % 1 2 10393
50 % 2 3 7698
40 % 2 3 7071
30 % 2 3 6171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures