Sequence Similarity Clusters for the Entities in PDB 1Y8O

Entity #1 | Chains: A
[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3 protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8223
95 % 2 5 8643 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 2 5 8577
70 % 2 5 8245
50 % 21 35 1257
40 % 21 35 1270
30 % 21 35 1241
Entity #2 | Chains: B
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14051
95 % 2 5 13337 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 5 13116
70 % 2 5 12336
50 % 2 5 10994
40 % 2 5 9964
30 % 2 5 8686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures