Sequence Similarity Clusters for the Entities in PDB 1Y8O

Entity #1 | Chains: A
[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3 protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 10319
95 % 2 5 10031 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 2 5 9901
70 % 2 5 9422
50 % 21 35 1300
40 % 21 35 1294
30 % 21 35 1288
Entity #2 | Chains: B
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14457
95 % 2 5 13558 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 5 13324
70 % 2 5 12498
50 % 2 5 11120
40 % 2 5 9999
30 % 2 6 7390

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures