Sequence Similarity Clusters for the Entities in PDB 1Y77

Entity #1 | Chains: T
5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 62 381
95 % 53 62 560
90 % 53 62 590
70 % 53 62 637
50 % 55 73 548
40 % 55 73 584
30 % 55 73 591
Entity #11 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 123 158
95 % 106 124 214
90 % 106 124 225
70 % 106 124 259
50 % 106 124 303
40 % 106 124 325
30 % 107 135 306
Entity #12 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 114 202
95 % 100 114 284
90 % 100 114 297
70 % 100 114 319
50 % 101 115 337
40 % 101 115 364
30 % 101 118 365
Entity #13 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 123 159
95 % 106 123 220
90 % 106 123 233
70 % 107 133 214
50 % 115 141 241
40 % 115 141 267
30 % 115 141 283
Entity #14 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 115 199
95 % 101 115 279
90 % 101 115 292
70 % 101 115 316
50 % 101 115 341
40 % 102 116 359
30 % 102 116 370
Entity #15 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 119 164
95 % 104 119 233
90 % 104 119 243
70 % 104 119 278
50 % 104 119 312
40 % 104 119 339
30 % 104 119 348
Entity #2 | Chains: N
5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 113 203
95 % 101 113 285
90 % 101 113 298
70 % 101 113 320
50 % 102 123 313
40 % 102 123 340
30 % 102 123 349
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 114 200
95 % 101 115 277
90 % 101 115 290
70 % 101 115 315
50 % 102 125 307
40 % 110 133 292
30 % 110 136 300
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 110 207
95 % 99 110 294
90 % 99 110 307
70 % 99 110 328
50 % 100 111 344
40 % 100 111 378
30 % 100 111 384
Entity #7 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 59 410
95 % 51 59 609
90 % 51 59 646
70 % 51 60 676
50 % 52 62 742
40 % 52 62 772
30 % 52 62 779
Entity #8 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 124 152
95 % 107 124 210
90 % 107 124 222
70 % 107 124 255
50 % 108 125 292
40 % 108 134 291
30 % 108 134 311
Entity #9 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 118 166
95 % 104 118 239
90 % 104 118 250
70 % 104 118 282
50 % 105 129 277
40 % 105 129 304
30 % 105 129 324

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.