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Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
Sequence Clustering and Redundancy Reduction Results
1Y77
Sequence Clusters for the Sequence Entities in PDB 1Y77
Entity #1: Chains: T - 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 51 417
95% 47 51 608
90% 47 51 639
70% 47 51 671
50% 49 53 641
40% 49 53 670
30% 49 53 674
Entity #11: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 102 183
95% 94 103 253
90% 94 103 266
70% 94 103 290
50% 94 103 320
40% 94 103 342
30% 95 105 337
Entity #12: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 97 202
95% 89 97 286
90% 89 97 301
70% 89 97 318
50% 90 98 341
40% 90 98 363
30% 90 98 376
Entity #13: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 102 184
95% 94 102 262
90% 94 102 274
70% 95 103 282
50% 104 112 267
40% 104 112 293
30% 104 112 309
Entity #14: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 98 200
95% 90 98 283
90% 90 98 298
70% 90 98 314
50% 90 98 352
40% 91 99 361
30% 91 99 372
Entity #15: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 101 188
95% 94 101 269
90% 94 101 281
70% 94 101 298
50% 94 101 331
40% 94 101 354
30% 94 101 365
Entity #2: Chains: N - 5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: P - 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 96 203
95% 90 96 287
90% 90 96 302
70% 90 96 319
50% 91 97 343
40% 91 97 365
30% 91 97 379
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 97 201
95% 90 98 280
90% 90 98 295
70% 90 98 312
50% 91 99 336
40% 100 108 300
30% 100 108 317
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 96 205
95% 90 96 288
90% 90 96 303
70% 90 96 320
50% 91 97 346
40% 91 97 367
30% 91 97 381
Entity #7: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 49 447
95% 45 49 646
90% 45 49 679
70% 45 50 704
50% 45 50 762
40% 45 50 774
30% 45 50 780
Entity #8: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 103 179
95% 95 103 252
90% 95 103 264
70% 95 103 289
50% 96 104 304
40% 96 104 330
30% 96 104 341
Entity #9: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 100 190
95% 94 100 273
90% 94 100 285
70% 94 100 304
50% 95 102 319
40% 95 102 341
30% 95 102 353
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.