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Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
Sequence Clustering and Redundancy Reduction Results
1Y77
Sequence Clusters for the Sequence Entities in PDB 1Y77
Entity #1: Chains: T - 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 53 426
95% 47 53 622
90% 47 53 652
70% 47 53 702
50% 49 55 692
40% 49 55 718
30% 49 55 719
Entity #11: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 107 187
95% 96 108 259
90% 96 108 272
70% 96 108 291
50% 96 108 320
40% 96 108 351
30% 97 110 346
Entity #12: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 102 205
95% 91 102 288
90% 91 102 303
70% 91 102 322
50% 92 103 346
40% 92 103 373
30% 92 103 379
Entity #13: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 107 188
95% 96 107 265
90% 96 107 277
70% 97 108 288
50% 105 116 275
40% 105 116 305
30% 105 116 321
Entity #14: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 103 201
95% 92 103 285
90% 92 103 300
70% 92 103 317
50% 92 103 352
40% 93 104 369
30% 93 104 375
Entity #15: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 106 190
95% 96 106 267
90% 96 106 281
70% 96 106 299
50% 96 106 327
40% 96 106 356
30% 96 106 364
Entity #2: Chains: N - 5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: P - 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 101 206
95% 92 101 289
90% 92 101 304
70% 92 101 323
50% 93 102 348
40% 93 102 375
30% 93 102 381
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 102 203
95% 92 103 282
90% 92 103 296
70% 92 103 315
50% 93 104 339
40% 101 112 319
30% 101 112 330
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 101 207
95% 92 101 291
90% 92 101 306
70% 92 101 325
50% 93 102 350
40% 93 102 378
30% 93 102 385
Entity #7: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 51 451
95% 45 51 653
90% 45 51 685
70% 45 52 728
50% 45 52 816
40% 45 52 835
30% 45 52 841
Entity #8: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 108 186
95% 97 108 258
90% 97 108 271
70% 97 108 290
50% 98 109 309
40% 98 109 336
30% 98 109 348
Entity #9: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 105 194
95% 96 105 276
90% 96 105 288
70% 96 105 306
50% 97 107 319
40% 97 107 350
30% 97 107 355
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.