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An Information Portal to 108957 Biological Macromolecular Structures

Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
Sequence Clustering and Redundancy Reduction Results
1Y77
Sequence Clusters for the Sequence Entities in PDB 1Y77
Entity #1: Chains: T - 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 53 427
95% 47 53 625
90% 47 53 655
70% 47 53 705
50% 49 55 701
40% 49 55 729
30% 49 55 730
Entity #11: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 107 187
95% 96 108 260
90% 96 108 273
70% 96 108 292
50% 96 108 321
40% 96 108 353
30% 97 110 347
Entity #12: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 102 205
95% 91 102 289
90% 91 102 304
70% 91 102 323
50% 92 103 347
40% 92 103 374
30% 92 103 379
Entity #13: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 107 188
95% 96 107 266
90% 96 107 278
70% 97 108 289
50% 105 116 275
40% 105 116 305
30% 105 116 321
Entity #14: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 103 201
95% 92 103 286
90% 92 103 301
70% 92 103 318
50% 92 103 353
40% 93 104 370
30% 93 104 375
Entity #15: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 106 190
95% 96 106 268
90% 96 106 282
70% 96 106 300
50% 96 106 328
40% 96 106 358
30% 96 106 366
Entity #2: Chains: N - 5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: P - 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 101 206
95% 92 101 290
90% 92 101 305
70% 92 101 324
50% 93 102 349
40% 93 102 376
30% 93 102 381
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 102 203
95% 92 103 283
90% 92 103 297
70% 92 103 316
50% 93 104 340
40% 101 112 319
30% 101 112 330
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 101 207
95% 92 101 291
90% 92 101 306
70% 92 101 325
50% 93 102 351
40% 93 102 379
30% 93 102 385
Entity #7: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 51 452
95% 45 51 656
90% 45 51 689
70% 45 52 733
50% 45 52 822
40% 45 52 841
30% 45 52 847
Entity #8: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 108 186
95% 97 108 259
90% 97 108 272
70% 97 108 291
50% 98 109 309
40% 98 109 337
30% 98 109 349
Entity #9: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 105 194
95% 96 105 277
90% 96 105 289
70% 96 105 307
50% 97 107 320
40% 97 107 352
30% 97 107 357
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.