Sequence Similarity Clusters for the Entities in PDB 1Y77

Entity #1 | Chains: T
5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 62 394
95 % 53 62 578
90 % 53 62 608
70 % 53 62 656
50 % 55 73 573
40 % 55 73 605
30 % 55 73 615
Entity #11 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 124 174
95 % 106 125 235
90 % 106 125 247
70 % 106 125 279
50 % 106 125 315
40 % 106 125 334
30 % 107 136 309
Entity #12 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 114 205
95 % 100 114 287
90 % 100 114 301
70 % 100 114 324
50 % 101 115 345
40 % 101 115 373
30 % 101 118 376
Entity #13 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 124 175
95 % 106 124 241
90 % 106 124 251
70 % 107 134 245
50 % 115 142 249
40 % 115 142 272
30 % 115 142 287
Entity #14 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 115 203
95 % 101 115 285
90 % 101 115 299
70 % 101 115 323
50 % 101 115 350
40 % 102 116 369
30 % 102 116 379
Entity #15 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 120 181
95 % 104 120 251
90 % 104 120 260
70 % 104 120 295
50 % 104 120 323
40 % 104 120 348
30 % 104 120 357
Entity #2 | Chains: N
5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 113 206
95 % 101 113 288
90 % 101 113 302
70 % 101 113 325
50 % 102 123 325
40 % 102 123 350
30 % 102 123 360
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 114 204
95 % 101 115 281
90 % 101 115 295
70 % 101 115 319
50 % 102 125 319
40 % 110 133 303
30 % 110 136 306
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 110 209
95 % 99 110 297
90 % 99 110 312
70 % 99 110 332
50 % 100 111 355
40 % 100 111 387
30 % 100 111 392
Entity #7 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 59 441
95 % 51 59 649
90 % 51 59 693
70 % 51 60 705
50 % 52 62 754
40 % 52 62 787
30 % 52 62 793
Entity #8 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 125 169
95 % 107 125 234
90 % 107 125 246
70 % 107 125 277
50 % 108 126 306
40 % 108 135 299
30 % 108 135 313
Entity #9 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 119 185
95 % 104 119 252
90 % 104 119 261
70 % 104 119 298
50 % 105 130 292
40 % 105 130 315
30 % 105 130 330

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.