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Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
Sequence Clustering and Redundancy Reduction Results
1Y77
Sequence Clusters for the Sequence Entities in PDB 1Y77
Entity #1: Chains: T - 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 51 413
95% 47 51 605
90% 47 51 636
70% 47 51 667
50% 49 53 638
40% 49 53 664
30% 49 53 664
Entity #11: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 102 180
95% 94 103 251
90% 94 103 263
70% 94 103 288
50% 94 103 317
40% 94 103 340
30% 95 105 336
Entity #12: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 97 202
95% 89 97 286
90% 89 97 299
70% 89 97 315
50% 90 98 335
40% 90 98 358
30% 90 98 371
Entity #13: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 102 181
95% 94 102 259
90% 94 102 270
70% 95 103 280
50% 95 103 311
40% 103 111 294
30% 103 111 311
Entity #14: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 98 200
95% 90 98 282
90% 90 98 295
70% 90 98 311
50% 90 98 347
40% 91 99 356
30% 91 99 367
Entity #15: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 101 186
95% 94 101 267
90% 94 101 278
70% 94 101 295
50% 94 101 327
40% 94 101 351
30% 94 101 362
Entity #2: Chains: N - 5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: P - 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 96 203
95% 90 96 287
90% 90 96 300
70% 90 96 316
50% 91 97 338
40% 91 97 361
30% 91 97 374
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 97 201
95% 90 98 279
90% 90 98 292
70% 90 98 309
50% 91 99 331
40% 99 107 301
30% 99 107 319
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 96 205
95% 90 96 288
90% 90 96 301
70% 90 96 318
50% 91 97 341
40% 91 97 363
30% 91 97 376
Entity #7: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 49 444
95% 45 49 642
90% 45 49 675
70% 45 50 698
50% 45 50 757
40% 45 50 769
30% 45 50 776
Entity #8: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 103 176
95% 95 103 250
90% 95 103 261
70% 95 103 287
50% 96 104 301
40% 96 104 328
30% 96 104 339
Entity #9: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 100 188
95% 94 100 271
90% 94 100 282
70% 94 100 301
50% 95 102 316
40% 95 102 339
30% 95 102 350
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.