Sequence Similarity Clusters for the Entities in PDB 1Y1Y

Entity #1 | Chains: T
5'-D(P*TP*AP*CP*GP*CP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 123 158
95 % 101 124 218
90 % 101 124 228
70 % 101 124 262
50 % 101 124 305
40 % 101 124 327
30 % 102 135 308
Entity #11 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 114 202
95 % 95 114 284
90 % 95 114 298
70 % 95 114 322
50 % 96 115 340
40 % 96 115 369
30 % 96 118 371
Entity #12 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 123 159
95 % 101 123 224
90 % 101 123 235
70 % 102 133 214
50 % 107 141 242
40 % 107 141 268
30 % 107 141 283
Entity #13 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 115 200
95 % 96 115 282
90 % 96 115 295
70 % 96 115 320
50 % 96 115 344
40 % 97 116 364
30 % 97 116 375
Entity #14 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 119 165
95 % 99 119 235
90 % 99 119 245
70 % 99 119 280
50 % 99 119 314
40 % 99 119 342
30 % 99 119 352
Entity #15 | Chains: S
Transcription elongation factor S-II protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24730
95 % 4 5 12772
90 % 4 5 12527
70 % 4 5 11789
50 % 4 5 10571
40 % 4 5 9631
30 % 4 5 8390
Entity #2 | Chains: P
5'-R(P*AP*GP*GP*C)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 113 203
95 % 96 113 285
90 % 96 113 299
70 % 96 113 323
50 % 97 123 315
40 % 97 123 343
30 % 97 123 353
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 114 201
95 % 96 115 278
90 % 96 115 291
70 % 96 115 317
50 % 97 125 308
40 % 102 133 294
30 % 102 136 302
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 110 207
95 % 94 110 294
90 % 94 110 308
70 % 94 110 330
50 % 95 111 349
40 % 95 111 381
30 % 95 111 387
Entity #6 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 59 433
95 % 49 59 638
90 % 49 59 684
70 % 49 60 698
50 % 50 62 749
40 % 50 62 779
30 % 50 62 786
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 124 152
95 % 102 124 214
90 % 102 124 225
70 % 102 124 258
50 % 103 125 294
40 % 103 134 293
30 % 103 134 313
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 118 168
95 % 99 118 240
90 % 99 118 251
70 % 99 118 284
50 % 100 129 280
40 % 100 129 307
30 % 100 129 328
Entity #9 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 62 387
95 % 51 62 571
90 % 51 62 603
70 % 51 62 652
50 % 53 73 561
40 % 53 73 596
30 % 53 73 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.