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An Information Portal to 105025 Biological Macromolecular Structures

RNA Polymerase II-TFIIS-DNA/RNA complex
Sequence Clustering and Redundancy Reduction Results
1Y1Y
Sequence Clusters for the Sequence Entities in PDB 1Y1Y
Entity #1: Chains: T - 5'-D(P*TP*AP*CP*GP*CP*CP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 102 186
95% 89 103 261
90% 89 103 274
70% 89 103 295
50% 89 103 330
40% 89 103 353
30% 90 105 346
Entity #11: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 97 205
95% 84 97 289
90% 84 97 306
70% 84 97 322
50% 85 98 346
40% 85 98 370
30% 85 98 383
Entity #12: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 102 189
95% 89 102 266
90% 89 102 278
70% 90 103 290
50% 95 112 274
40% 95 112 303
30% 95 112 318
Entity #13: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 98 203
95% 85 98 286
90% 85 98 303
70% 85 98 318
50% 85 98 358
40% 86 99 367
30% 86 99 378
Entity #14: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 101 191
95% 89 101 271
90% 89 101 283
70% 89 101 301
50% 89 101 338
40% 89 101 360
30% 89 101 373
Entity #15: Chains: S - Transcription elongation factor S-II protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32176
95% 4 4 14435
90% 4 4 14092
70% 4 4 13129
50% 4 4 11527
40% 4 4 10323
30% 4 4 8906
Entity #2: Chains: P - 5'-R(P*AP*GP*GP*C)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 96 206
95% 85 96 290
90% 85 96 307
70% 85 96 324
50% 86 97 348
40% 86 97 372
30% 86 97 385
Entity #4: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 97 204
95% 85 98 282
90% 85 98 298
70% 85 98 315
50% 86 99 341
40% 91 108 311
30% 91 108 328
Entity #5: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 96 208
95% 85 96 291
90% 85 96 308
70% 85 96 325
50% 86 97 351
40% 86 97 374
30% 86 97 387
Entity #6: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 49 457
95% 43 49 658
90% 43 49 693
70% 43 50 732
50% 43 50 819
40% 43 50 834
30% 43 50 834
Entity #7: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 103 183
95% 90 103 260
90% 90 103 272
70% 90 103 294
50% 91 104 316
40% 91 104 342
30% 91 104 352
Entity #8: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 100 193
95% 89 100 275
90% 89 100 287
70% 89 100 307
50% 90 102 329
40% 90 102 352
30% 90 102 363
Entity #9: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 51 420
95% 45 51 613
90% 45 51 646
70% 45 51 696
50% 47 53 683
40% 47 53 713
30% 47 53 713
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.