Sequence Similarity Clusters for the Entities in PDB 1Y1Y

Entity #1 | Chains: T
5'-D(P*TP*AP*CP*GP*CP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 142 174
95 % 102 143 234
90 % 102 143 249
70 % 102 143 280
50 % 104 148 296
40 % 104 148 311
30 % 105 161 292
Entity #11 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 116 228
95 % 96 116 320
90 % 96 116 338
70 % 98 121 355
50 % 99 123 406
40 % 99 123 436
30 % 99 126 425
Entity #12 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 142 175
95 % 102 142 236
90 % 102 142 250
70 % 105 159 250
50 % 110 167 246
40 % 110 167 264
30 % 110 167 270
Entity #13 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 117 224
95 % 97 117 315
90 % 97 117 333
70 % 97 117 369
50 % 99 122 416
40 % 100 124 434
30 % 100 124 435
Entity #14 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 138 183
95 % 100 138 244
90 % 100 138 259
70 % 100 138 289
50 % 102 143 313
40 % 102 143 328
30 % 102 143 336
Entity #15 | Chains: S
Transcription elongation factor S-II protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27906
95 % 4 5 14355
90 % 4 5 14084
70 % 4 5 13237
50 % 4 6 10299
40 % 4 6 9340
30 % 4 6 8136
Entity #2 | Chains: P
5'-R(P*AP*GP*GP*C)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 115 229
95 % 97 115 321
90 % 97 115 339
70 % 99 120 356
50 % 100 132 368
40 % 100 132 393
30 % 100 132 397
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 116 226
95 % 97 117 313
90 % 97 117 329
70 % 100 124 339
50 % 100 134 357
40 % 105 142 324
30 % 105 145 330
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 112 232
95 % 95 112 326
90 % 95 112 345
70 % 95 112 378
50 % 96 114 439
40 % 96 114 470
30 % 96 114 471
Entity #6 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 61 563
95 % 50 61 781
90 % 50 61 809
70 % 50 62 833
50 % 53 69 753
40 % 53 69 785
30 % 53 69 780
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 143 172
95 % 103 143 233
90 % 103 143 248
70 % 105 148 271
50 % 106 150 291
40 % 106 160 284
30 % 106 160 293
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 137 185
95 % 100 137 247
90 % 100 137 262
70 % 100 137 294
50 % 103 155 279
40 % 103 155 298
30 % 103 155 307
Entity #9 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 64 522
95 % 52 64 715
90 % 52 64 745
70 % 52 64 796
50 % 56 82 567
40 % 56 82 605
30 % 56 82 595

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.