Sequence Similarity Clusters for the Entities in PDB 1Y1Y

Entity #1 | Chains: T
5'-D(P*TP*AP*CP*GP*CP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 124 175
95 % 101 125 236
90 % 101 125 247
70 % 101 125 279
50 % 101 125 316
40 % 101 125 336
30 % 102 136 313
Entity #11 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 114 205
95 % 95 114 287
90 % 95 114 301
70 % 95 114 325
50 % 96 115 347
40 % 96 115 380
30 % 96 118 378
Entity #12 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 124 176
95 % 101 124 241
90 % 101 124 251
70 % 102 134 254
50 % 107 142 252
40 % 107 142 273
30 % 107 142 289
Entity #13 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 115 203
95 % 96 115 285
90 % 96 115 299
70 % 96 115 323
50 % 96 115 354
40 % 97 116 376
30 % 97 116 382
Entity #14 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 120 181
95 % 99 120 251
90 % 99 120 260
70 % 99 120 296
50 % 99 120 325
40 % 99 120 351
30 % 99 120 359
Entity #15 | Chains: S
Transcription elongation factor S-II protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25150
95 % 4 5 12986
90 % 4 5 12745
70 % 4 5 11985
50 % 4 5 10729
40 % 4 5 9759
30 % 4 5 8491
Entity #2 | Chains: P
5'-R(P*AP*GP*GP*C)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 113 206
95 % 96 113 288
90 % 96 113 302
70 % 96 113 326
50 % 97 123 327
40 % 97 123 353
30 % 97 123 362
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 114 204
95 % 96 115 281
90 % 96 115 295
70 % 96 115 319
50 % 97 125 321
40 % 102 133 307
30 % 102 136 310
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 110 209
95 % 94 110 299
90 % 94 110 314
70 % 94 110 334
50 % 95 111 360
40 % 95 111 393
30 % 95 111 395
Entity #6 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 59 445
95 % 49 59 652
90 % 49 59 696
70 % 49 60 709
50 % 50 62 755
40 % 50 62 789
30 % 50 62 793
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 125 171
95 % 102 125 235
90 % 102 125 246
70 % 102 125 277
50 % 103 126 308
40 % 103 135 301
30 % 103 135 317
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 119 186
95 % 99 119 252
90 % 99 119 261
70 % 99 119 298
50 % 100 130 294
40 % 100 130 318
30 % 100 130 332
Entity #9 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 62 396
95 % 51 62 579
90 % 51 62 609
70 % 51 62 657
50 % 53 73 575
40 % 53 73 608
30 % 53 73 619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.