Sequence Similarity Clusters for the Entities in PDB 1Y1Y

Entity #1 | Chains: T
5'-D(P*TP*AP*CP*GP*CP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 123 158
95 % 101 124 216
90 % 101 124 227
70 % 101 124 261
50 % 101 124 304
40 % 101 124 326
30 % 102 135 306
Entity #11 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 114 202
95 % 95 114 284
90 % 95 114 298
70 % 95 114 320
50 % 96 115 339
40 % 96 115 365
30 % 96 118 367
Entity #12 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 123 159
95 % 101 123 222
90 % 101 123 234
70 % 102 133 214
50 % 107 141 241
40 % 107 141 267
30 % 107 141 283
Entity #13 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 115 199
95 % 96 115 280
90 % 96 115 293
70 % 96 115 318
50 % 96 115 343
40 % 97 116 361
30 % 97 116 372
Entity #14 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 119 164
95 % 99 119 234
90 % 99 119 244
70 % 99 119 278
50 % 99 119 313
40 % 99 119 341
30 % 99 119 350
Entity #15 | Chains: S
Transcription elongation factor S-II protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24580
95 % 4 5 12673
90 % 4 5 12427
70 % 4 5 11689
50 % 4 5 10483
40 % 4 5 9560
30 % 4 5 8327
Entity #2 | Chains: P
5'-R(P*AP*GP*GP*C)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 113 203
95 % 96 113 285
90 % 96 113 299
70 % 96 113 321
50 % 97 123 314
40 % 97 123 342
30 % 97 123 351
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 114 200
95 % 96 115 277
90 % 96 115 290
70 % 96 115 316
50 % 97 125 308
40 % 102 133 292
30 % 102 136 300
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 110 207
95 % 94 110 294
90 % 94 110 308
70 % 94 110 329
50 % 95 111 346
40 % 95 111 379
30 % 95 111 384
Entity #6 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 59 412
95 % 49 59 610
90 % 49 59 647
70 % 49 60 678
50 % 50 62 745
40 % 50 62 773
30 % 50 62 781
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 124 152
95 % 102 124 212
90 % 102 124 224
70 % 102 124 257
50 % 103 125 293
40 % 103 134 291
30 % 103 134 311
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 118 166
95 % 99 118 239
90 % 99 118 250
70 % 99 118 282
50 % 100 129 278
40 % 100 129 305
30 % 100 129 326
Entity #9 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 62 381
95 % 51 62 561
90 % 51 62 591
70 % 51 62 638
50 % 53 73 550
40 % 53 73 585
30 % 53 73 592

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.